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Report for CCDS53973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53973.1 Public Homo sapiens 15 RGMA 24 110 108 CCDS HistoryNCBI Gene:56963Re-query CCDS DB by CCDS ID:53973.1Re-query CCDS DB by GeneID:56963See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53973.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425933.6 ENSP00000404442.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425933.6Link to Ensembl Protein Viewer:ENSP00000404442.2Re-query CCDS DB by Nucleotide ID:ENST00000425933Re-query CCDS DB by Protein ID:ENSP00000404442
Original member Current member EBI ENST00000542321.6 ENSP00000440025.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542321.6Link to Ensembl Protein Viewer:ENSP00000440025.2Re-query CCDS DB by Nucleotide ID:ENST00000542321Re-query CCDS DB by Protein ID:ENSP00000440025
Original member Current member EBI ENST00000543599.5 ENSP00000442498.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543599.5Link to Ensembl Protein Viewer:ENSP00000442498.1Re-query CCDS DB by Nucleotide ID:ENST00000543599Re-query CCDS DB by Protein ID:ENSP00000442498
Original member Current member NCBI NM_001166286.2 NP_001159758.1 Accepted alive Link to Nucleotide Sequence:NM_001166286.2Link to Protein Sequence:NP_001159758.1Re-query CCDS DB by Nucleotide ID:NM_001166286Re-query CCDS DB by Protein ID:NP_001159758Link to BLAST:NP_001159758.1
Original member Current member NCBI NM_001166287.2 NP_001159759.1 Accepted alive Link to Nucleotide Sequence:NM_001166287.2Link to Protein Sequence:NP_001159759.1Re-query CCDS DB by Nucleotide ID:NM_001166287Re-query CCDS DB by Protein ID:NP_001159759Link to BLAST:NP_001159759.1
Original member Current member NCBI NM_001166288.2 NP_001159760.1 Accepted alive Link to Nucleotide Sequence:NM_001166288.2Link to Protein Sequence:NP_001159760.1Re-query CCDS DB by Nucleotide ID:NM_001166288Re-query CCDS DB by Protein ID:NP_001159760Link to BLAST:NP_001159760.1
Original member Current member NCBI NM_001166289.2 NP_001159761.1 Accepted alive Link to Nucleotide Sequence:NM_001166289.2Link to Protein Sequence:NP_001159761.1Re-query CCDS DB by Nucleotide ID:NM_001166289Re-query CCDS DB by Protein ID:NP_001159761Link to BLAST:NP_001159761.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159758.1 434 Q96B86-3 434 100% 0 0
NP_001159759.1 434 Q96B86-3 434 100% 0 0
NP_001159760.1 434 Q96B86-3 434 100% 0 0
NP_001159761.1 434 Q96B86-3 434 100% 0 0

Chromosomal Locations for CCDS 53973.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 93044998 93045705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93051993 93052507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93072916 93072997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGGTATGGGGAGAGGGGCAGGACGTTCAGCCCTGGGATTCTGGCCGACCCTCGCCTTCCTTCTCTGCA
GCTTCCCCGCAGCCACCTCCCCGTGCAAGATCCTCAAGTGCAACTCTGAGTTCTGGAGCGCCACGTCGGG
CAGCCACGCCCCAGCCTCAGACGACACCCCCGAGTTCTGTGCAGCCTTGCGCAGCTACGCCCTGTGCACG
CGGCGGACGGCCCGCACCTGCCGGGGTGACCTGGCCTACCACTCGGCCGTCCATGGCATAGAGGACCTCA
TGAGCCAGCACAACTGCTCCAAGGATGGCCCCACCTCGCAGCCACGCCTGCGCACGCTCCCACCGGCCGG
AGACAGCCAGGAGCGCTCGGACAGCCCCGAGATCTGCCATTACGAGAAGAGCTTTCACAAGCACTCGGCC
ACCCCCAACTACACGCACTGTGGCCTCTTCGGGGACCCACACCTCAGGACTTTCACCGACCGCTTCCAGA
CCTGCAAGGTGCAGGGCGCCTGGCCGCTCATCGACAATAATTACCTGAACGTGCAGGTCACCAACACGCC
TGTGCTGCCCGGCTCAGCGGCCACTGCCACCAGCAAGCTCACCATCATCTTCAAGAACTTCCAGGAGTGT
GTGGACCAGAAGGTGTACCAGGCTGAGATGGACGAGCTCCCGGCCGCCTTCGTGGATGGCTCTAAGAACG
GTGGGGACAAGCACGGGGCCAACAGCCTGAAGATCACTGAGAAGGTGTCAGGCCAGCACGTGGAGATCCA
GGCCAAGTACATCGGCACCACCATCGTGGTGCGCCAGGTGGGCCGCTACCTGACCTTTGCCGTCCGCATG
CCAGAGGAAGTGGTCAATGCTGTGGAGGACTGGGACAGCCAGGGTCTCTACCTCTGCCTGCGGGGCTGCC
CCCTCAACCAGCAGATCGACTTCCAGGCCTTCCACACCAATGCTGAGGGCACCGGTGCCCGCAGGCTGGC
AGCCGCCAGCCCTGCACCCACAGCCCCCGAGACCTTCCCATACGAGACAGCCGTGGCCAAGTGCAAGGAG
AAGCTGCCGGTGGAGGACCTGTACTACCAGGCCTGCGTCTTCGACCTCCTCACCACGGGCGACGTGAACT
TCACACTGGCCGCCTACTACGCGTTGGAGGATGTCAAGATGCTCCACTCCAACAAAGACAAACTGCACCT
GTATGAGAGGACTCGGGACCTGCCAGGCAGGGCGGCTGCGGGGCTGCCCCTGGCCCCCCGGCCCCTCCTG
GGCGCCCTCGTCCCGCTCCTGGCCCTGCTCCCTGTGTTCTGCTAG

Translation (434 aa):
MGMGRGAGRSALGFWPTLAFLLCSFPAATSPCKILKCNSEFWSATSGSHAPASDDTPEFCAALRSYALCT
RRTARTCRGDLAYHSAVHGIEDLMSQHNCSKDGPTSQPRLRTLPPAGDSQERSDSPEICHYEKSFHKHSA
TPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSAATATSKLTIIFKNFQEC
VDQKVYQAEMDELPAAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTTIVVRQVGRYLTFAVRM
PEEVVNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCKE
KLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKMLHSNKDKLHLYERTRDLPGRAAAGLPLAPRPLL
GALVPLLALLPVFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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