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Report for CCDS10559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10559.1 Public Homo sapiens 16 RRN3 24 110 108 CCDS HistoryNCBI Gene:54700Re-query CCDS DB by CCDS ID:10559.1Re-query CCDS DB by GeneID:54700See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000198767.11 ENSP00000198767.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000198767.11Link to Ensembl Protein Viewer:ENSP00000198767.7Re-query CCDS DB by Nucleotide ID:ENST00000198767Re-query CCDS DB by Protein ID:ENSP00000198767
Original member Current member NCBI NM_018427.5 NP_060897.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018427.5Link to Protein Sequence:NP_060897.3Re-query CCDS DB by Nucleotide ID:NM_018427Re-query CCDS DB by Protein ID:NP_060897Link to BLAST:NP_060897.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060897.3 651 Q9NYV6-1 651 100% 0 0

Chromosomal Locations for CCDS 10559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 15061744 15061905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15063196 15063283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15065219 15065371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15068169 15068277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15070070 15070254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15071121 15071251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15072950 15073080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15074723 15074861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15076558 15076650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15079998 15080096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15083513 15083582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15084642 15084705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15085639 15085698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15086129 15086258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15086365 15086454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15091315 15091371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15092509 15092614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15094145 15094233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1956 nt):
ATGGCGGCACCGCTGCTTCACACGCGTTTGCCGGGAGATGCGGCCGCTTCGTCCTCTGCAGTTAAGAAGC
TGGGCGCGTCGAGGACTGGGATTTCAAATATGCGTGCATTAGAGAATGACTTTTTCAATTCTCCCCCAAG
AAAAACTGTTCGGTTTGGTGGAACTGTGACAGAAGTCTTGCTGAAGTACAAAAAGGGTGAAACAAATGAC
TTTGAGTTGTTGAAGAACCAGCTGTTAGATCCAGACATAAAGGATGACCAGATCATCAACTGGCTGCTAG
AATTCCGTTCTTCTATCATGTACTTGACAAAAGACTTTGAGCAACTTATCAGTATTATATTAAGATTGCC
TTGGTTGAATAGAAGTCAAACAGTAGTGGAAGAGTATTTGGCTTTTCTTGGTAATCTTGTATCAGCACAG
ACTGTTTTCCTCAGACCGTGTCTCAGCATGATTGCTTCCCATTTTGTGCCTCCCCGAGTGATCATTAAGG
AAGGCGATGTAGATGTTTCAGATTCTGATGATGAAGATGATAATCTTCCTGCAAATTTTGACACATGTCA
CAGAGCCTTGCAAATAATAGCAAGATATGTACCATCGACACCGTGGTTTCTCATGCCAATACTGGTGGAA
AAATTTCCATTTGTTCGAAAATCAGAGAGAACACTGGAATGTTACGTTCATAACTTACTAAGGATTAGTG
TATATTTTCCAACCTTGAGGCATGAAATTCTGGAGCTTATTATTGAAAAACTACTCAAGTTGGATGTGAA
TGCATCCCGGCAGGGTATTGAAGATGCTGAAGAAACAGCAACTCAAACTTGTGGTGGGACAGATTCCACG
GAAGGATTGTTTAATATGGATGAAGATGAAGAAACTGAACATGAAACAAAGGCTGGTCCTGAACGGCTCG
ACCAGATGGTGCATCCTGTAGCCGAGCGCCTGGACATCCTGATGTCTTTGGTTTTGTCCTACATGAAGGA
TGTCTGCTATGTAGATGGTAAGGTTGATAACGGCAAAACAAAGGATCTATATCGCGACCTGATAAACATC
TTTGACAAACTCCTGTTGCCCACCCATGCCTCCTGCCATGTACAGTTTTTCATGTTTTACCTCTGTAGTT
TCAAATTGGGATTCGCAGAGGCATTTTTGGAACATCTCTGGAAAAAATTGCAGGACCCAAGTAATCCTGC
CATCATCAGGCAGGCTGCTGGAAATTATATTGGAAGCTTTTTGGCAAGAGCTAAATTTATTCCTCTTATT
ACTGTAAAATCATGCCTAGATCTTTTGGTTAACTGGCTGCACATATACCTTAATAACCAGGATTCGGGAA
CAAAGGCATTCTGCGATGTTGCTCTCCATGGACCATTTTACTCAGCCTGCCAAGCTGTGTTCTACACCTT
TGTTTTTAGACACAAGCAGCTTTTGAGCGGAAACCTGAAAGAAGGTTTGCAGTATCTTCAGAGTCTGAAT
TTTGAGCGGATAGTGATGAGCCAGCTAAATCCCCTGAAGATTTGCCTGCCCTCAGTGGTTAACTTTTTTG
CTGCAATCACAAATAAGTACCAGCTCGTCTTCTGCTACACCATCATTGAGAGGAACAATCGCCAGATGCT
GCCAGTCATTAGGAGTACCGCTGGAGGAGACTCAGTGCAGATCTGCACAAACCCGCTGGACACCTTCTTC
CCCTTTGATCCCTGTGTGCTGAAGAGGTCAAAGAAATTCATTGATCCTATTTATCAGGTGTGGGAAGACA
TGAGTGCTGAAGAGCTACAGGAGTTCAAGAAACCCATGAAAAAGGACATAGTGGAAGATGAAGATGATGA
CTTTCTGAAAGGCGAAGTGCCCCAGAATGATACCGTGATTGGGATCACACCAAGCTCCTTTGACACGCAT
TTCCGAAGTCCTTCAAGTAGTGTGGGCTCCCCACCCGTGTTGTACATGCAACCCAGTCCCCTCTGA

Translation (651 aa):
MAAPLLHTRLPGDAAASSSAVKKLGASRTGISNMRALENDFFNSPPRKTVRFGGTVTEVLLKYKKGETND
FELLKNQLLDPDIKDDQIINWLLEFRSSIMYLTKDFEQLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQ
TVFLRPCLSMIASHFVPPRVIIKEGDVDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVE
KFPFVRKSERTLECYVHNLLRISVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDST
EGLFNMDEDEETEHETKAGPERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINI
FDKLLLPTHASCHVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI
TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLN
FERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFF
PFDPCVLKRSKKFIDPIYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFLKGEVPQNDTVIGITPSSFDTH
FRSPSSSVGSPPVLYMQPSPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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