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Report for CCDS42147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42147.1 Public Homo sapiens 16 YPEL3 24 110 108 CCDS HistoryNCBI Gene:83719Re-query CCDS DB by CCDS ID:42147.1Re-query CCDS DB by GeneID:83719See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42147.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398841.6 ENSP00000381821.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398841.6Link to Ensembl Protein Viewer:ENSP00000381821.1Re-query CCDS DB by Nucleotide ID:ENST00000398841Re-query CCDS DB by Protein ID:ENSP00000381821
Original member Current member NCBI NM_031477.5 NP_113665.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031477.5Link to Protein Sequence:NP_113665.3Re-query CCDS DB by Nucleotide ID:NM_031477Re-query CCDS DB by Protein ID:NP_113665Link to BLAST:NP_113665.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113665.3 157 P61236-2 157 100% 0 0

Chromosomal Locations for CCDS 42147.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30092710 30092799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30094789 30094897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30095103 30095146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30095252 30095482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGTGTGTGGCCCAGGTCCTGACAGCCCACCTACTCCCTCCCCGGCAGGCACTGGGCTCCCTCTGCTCCC
CGTGGGCCGCTCCCCGCGTGGGGCCACTGCCCCCGGCCCCCGCCATGGTGCGGATTTCAAAGCCCAAGAC
GTTTCAGGCCTACTTGGATGATTGTCACCGGAGGTATAGCTGTGCCCACTGCCGCGCTCACCTGGCCAAC
CACGACGACCTCATCTCCAAGTCCTTCCAGGGCAGTCAGGGGCGTGCCTACCTCTTCAACTCAGTGGTGA
ACGTGGGCTGCGGGCCAGCCGAGGAGCGGGTGCTGCTGACCGGCCTCCATGCTGTCGCCGACATCCACTG
CGAGAACTGCAAGACCACTTTGGGCTGGAAATATGAACAGGCCTTTGAGAGCAGCCAGAAGTACAAAGAG
GGGAAGTACATCATTGAACTCAACCACATGATCAAAGACAACGGCTGGGACTGA

Translation (157 aa):
MCVAQVLTAHLLPPRQALGSLCSPWAAPRVGPLPPAPAMVRISKPKTFQAYLDDCHRRYSCAHCRAHLAN
HDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKYKE
GKYIIELNHMIKDNGWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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