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Report for CCDS42170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42170.1 Public Homo sapiens 16 CMTM4 24 110 108 CCDS HistoryNCBI Gene:146223Re-query CCDS DB by CCDS ID:42170.1Re-query CCDS DB by GeneID:146223See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394106.7 ENSP00000377666.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394106.7Link to Ensembl Protein Viewer:ENSP00000377666.2Re-query CCDS DB by Nucleotide ID:ENST00000394106Re-query CCDS DB by Protein ID:ENSP00000377666
Original member Current member NCBI NM_181521.3 NP_852662.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181521.3Link to Protein Sequence:NP_852662.1Re-query CCDS DB by Nucleotide ID:NM_181521Re-query CCDS DB by Protein ID:NP_852662Link to BLAST:NP_852662.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852662.1 208 Q8IZR5-2 208 100% 0 0

Chromosomal Locations for CCDS 42170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 66622058 66622222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66623404 66623502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66636405 66636581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66696340 66696525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGCGGAGCGGCGAGGAGCTGGACGGCTTCGAGGGCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCA
GCAGCCCGTACCAGCCCACCACCGAGCCGGTGAGCCAGCGCCGCGGGCTGGCCGGCCTGCGCTGCGACCC
CGACTACCTGCGCGGCGCGCTCGGCCGCCTCAAGGTCGCCCAAGTGATCTTGGCCCTGATTGCATTCATC
TGCATAGAGACCATCATGGCATGCTCCCCGTGTGAAGGCCTCTACTTTTTTGAGTTTGTGAGCTGCAGTG
CGTTTGTGGTGACTGGCGTCTTGCTGATTATGTTCAGTCTCAACCTGCACATGAGGATCCCCCAGATCAA
CTGGAATCTGACAGATTTGGTCAACACTGGACTCAGCGCTTTCCTTTTCTTTATTGCTTCAATCGTACTG
GCTGCTTTAAACCATAGAGCCGGAGCAGAAATTGCTGCCGTGATATTTGGCTTCTTGGCGACTGCGGCAT
ATGCAGTGAACACATTCCTGGCAGTGCAGAAATGGAGAGTCAGCGTCCGCCAGCAGAGCACCAATGACTA
CATCCGAGCCCGCACGGAGTCCAGGGATGTGGACAGTCGCCCTGAGATCCAGCGCCTGGACACGTGA

Translation (208 aa):
MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQVILALIAFI
CIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFFIASIVL
AALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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