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Report for CCDS76900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76900.1 Public Homo sapiens 16 TMEM170A 24 110 108 CCDS HistoryNCBI Gene:124491Re-query CCDS DB by CCDS ID:76900.1Re-query CCDS DB by GeneID:124491See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000569540.5 ENSP00000455491.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000569540.5Link to Ensembl Protein Viewer:ENSP00000455491.1Re-query CCDS DB by Nucleotide ID:ENST00000569540Re-query CCDS DB by Protein ID:ENSP00000455491
Original member Current member NCBI NM_001304997.2 NP_001291926.1 Accepted alive Link to Nucleotide Sequence:NM_001304997.2Link to Protein Sequence:NP_001291926.1Re-query CCDS DB by Nucleotide ID:NM_001304997Re-query CCDS DB by Protein ID:NP_001291926Link to BLAST:NP_001291926.1

Chromosomal Locations for CCDS 76900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 75447558 75447688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75451669 75451839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75464232 75464250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGCAGAGAGCGGCCGCAGAGATGTGGTATGGTGTATTCCTGTGGGCACTGGTGTCTTCTCTCTTCTTTC
ATGTCCCTGCTGGATTACTGGCCCTCTTCACCCTCAGACATCACAAATATGGTAGGTTCATGTCTGTAAG
CATCCTGTTGATGGGCATCGTGGGACCAATTACTGCTGGAATCTTGACAAGTGCAGCTATTGCTGGAGTT
TACCGAGCAGCAGGGAAGGAAATGATACCATTTGAAGCCCTCACACTGGGCACTGGACAGACATTTTGCG
TCTTGGTGGTCTCCTTTTTACGGATTTTAGCTACTCTATAG

Translation (106 aa):
MQRAAAEMWYGVFLWALVSSLFFHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGV
YRAAGKEMIPFEALTLGTGQTFCVLVVSFLRILATL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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