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Report for CCDS10917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10917.1 Public Homo sapiens 16 TMEM170A 24 110 108 CCDS HistoryNCBI Gene:124491Re-query CCDS DB by CCDS ID:10917.1Re-query CCDS DB by GeneID:124491See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000561878.2 ENSP00000454404.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000561878.2Link to Ensembl Protein Viewer:ENSP00000454404.1Re-query CCDS DB by Nucleotide ID:ENST00000561878Re-query CCDS DB by Protein ID:ENSP00000454404
Original member Current member NCBI NM_145254.3 NP_660297.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145254.3Link to Protein Sequence:NP_660297.1Re-query CCDS DB by Nucleotide ID:NM_145254Re-query CCDS DB by Protein ID:NP_660297Link to BLAST:NP_660297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660297.1 144 Q8WVE7-1 144 100% 0 0

Chromosomal Locations for CCDS 10917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 75447558 75447688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75451669 75451839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75464468 75464600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGAGCGCGAGGGGAGCGGCGGCAGCGGCGGGTCGGCCGGGCTCCTGCAGCAGATCCTGAGCCTGAAGG
TTGTGCCGCGGGTGGGCAACGGGACCCTGTGCCCCAACTCTACTTCCCTCTGCTCCTTCCCAGAGATGTG
GTATGGTGTATTCCTGTGGGCACTGGTGTCTTCTCTCTTCTTTCATGTCCCTGCTGGATTACTGGCCCTC
TTCACCCTCAGACATCACAAATATGGTAGGTTCATGTCTGTAAGCATCCTGTTGATGGGCATCGTGGGAC
CAATTACTGCTGGAATCTTGACAAGTGCAGCTATTGCTGGAGTTTACCGAGCAGCAGGGAAGGAAATGAT
ACCATTTGAAGCCCTCACACTGGGCACTGGACAGACATTTTGCGTCTTGGTGGTCTCCTTTTTACGGATT
TTAGCTACTCTATAG

Translation (144 aa):
MEREGSGGSGGSAGLLQQILSLKVVPRVGNGTLCPNSTSLCSFPEMWYGVFLWALVSSLFFHVPAGLLAL
FTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFEALTLGTGQTFCVLVVSFLRI
LATL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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