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Report for CCDS54051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54051.1 Public Homo sapiens 16 KLHDC4 24 110 108 CCDS HistoryNCBI Gene:54758Re-query CCDS DB by CCDS ID:54051.1Re-query CCDS DB by GeneID:54758See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54051.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347925.9 ENSP00000325717.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347925.9Link to Ensembl Protein Viewer:ENSP00000325717.5Re-query CCDS DB by Nucleotide ID:ENST00000347925Re-query CCDS DB by Protein ID:ENSP00000325717
Original member Current member NCBI NM_001184856.2 NP_001171785.1 Accepted alive Link to Nucleotide Sequence:NM_001184856.2Link to Protein Sequence:NP_001171785.1Re-query CCDS DB by Nucleotide ID:NM_001184856Re-query CCDS DB by Protein ID:NP_001171785Link to BLAST:NP_001171785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171785.1 489 Q8TBB5-3 489 100% 0 0

Chromosomal Locations for CCDS 54051.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87708351 87708466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87709265 87709667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87711235 87711443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87714498 87714573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87726765 87726924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87748673 87748809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87755194 87755292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87756399 87756477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87761949 87762040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87765792 87765890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGGCAAGAAGGGCAAGAAGGAGAAGAAGGGCCGCGGCGCGGAGAAGACGGCCGCCAAGATGGAGAAGA
AGGTGTCTAAGCGCTCGCGGAAGGAGGAGGAAGACCTGGAAGCGCTCATAGCCCATTTCCAGACACTCGA
TGCCAAGAGGACTCAGACTGTGGAACTTCCGTGCCCCCCACCCTCACCAAGGTTAAATGCCTCCCTCTCG
GTTCATCCTGAGAAAGATGAGTTAATCCTTTTTGGAGGTGAATATTTCAACGGCCAAAAAACTTTTTTGT
ATAACGAGCTCTATGTCTACAATACCAGAAAGGACACCTGGACCAAAGTTGACATCCCCAGTCCACCTCC
GAGGCGCTGTGCTCACCAGGCGGTGGTAGTGCCTCAAGGTGGCGGACAGCTGTGGGTCTTTGGAGGGGAG
TTTGCCTCTCCCAACGGAGAGCAGTTCTACCACTACAAGGATCTCTGGGTCCTGCATTTGGCCACCAAGA
CCTGGGAACAAGTCAAGGATTACATCTACTACAACGACGTGTATGCCTTTAATCTGGACACCTTCACATG
GAGCAAGCTGTCCCCGTCAGGGACGGGGCCCACACCCAGATCAGGCTGCCAGATGTCCGTCACTCCCCAG
GGCGGCATCGTCGTCTATGGGGGCTACTCGAAACAGAGAGTTAAGAAAGACGTGGACAAGGGCACACGGC
ACTCAGACATGTTCCTGCTGAAGCCAGAGGACGGAAGAGAAGACAAGTGGGTTTGGACTCGGATGAACCC
TTCGGGGGTCAAGCCCACCCCACGGTCTGGCTTTTCCGTGGCCATGGCCCCGAATCACCAGACACTGTTC
TTCGGGGGTGTCTGTGACGAGGAAGAGGAGGAGAGCCTGTCGGGCGAGTTCTTCAACGATCTGTACTTCT
ACGACGCCACCAGGAACCGTTGGTTTGAGGGACAGCTGAAGGGACCCAAGTCTGAAAAGAAGAAACGCAG
GCGGGGCAGAAAAGAGGAGCCCGAAGGTGGTAGCAGGCCGGCGTGTGGGGGAGCTGGCACCCAGGGGCCT
GTGCAGCTGGTCAAGGAGGTGGTGGCCGAGGATGGCACCGTGGTCACCATTAAGCAGGTGCTCACCGCGC
CAGGCTCGGCGGGGCAGCCCCGGTCTGAGGACGAAGACAGCCTTGAGGAGGCCGGCAGCCCCGCACCTGG
GCCGTGTCCACGCTCCAACGCCATGCTGGCTGTGAAGCATGGGGTGCTCTACGTCTATGGGGGCATGTTT
GAGGCCGGCGACCGCCAGGTCACCCTCAGCGACCTGCACTGCCTGGACCTGCACAGGATGGAGGCGTGGA
AGGCCTTGGTGGAGATGGACCCAGAAACTCAGGAGTGGCTGGAGGAGACGGACTCGGAAGAGGACAGTGA
GGAGGTTGAGGGCGCCGAGGGTGGGGTCGACGACGAAGACAGCGGAGAGGAGAGCGGTGCGGAGGACTGA

Translation (489 aa):
MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEEEDLEALIAHFQTLDAKRTQTVELPCPPPSPRLNASLS
VHPEKDELILFGGEYFNGQKTFLYNELYVYNTRKDTWTKVDIPSPPPRRCAHQAVVVPQGGGQLWVFGGE
FASPNGEQFYHYKDLWVLHLATKTWEQVKDYIYYNDVYAFNLDTFTWSKLSPSGTGPTPRSGCQMSVTPQ
GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTRMNPSGVKPTPRSGFSVAMAPNHQTLF
FGGVCDEEEEESLSGEFFNDLYFYDATRNRWFEGQLKGPKSEKKKRRRGRKEEPEGGSRPACGGAGTQGP
VQLVKEVVAEDGTVVTIKQVLTAPGSAGQPRSEDEDSLEEAGSPAPGPCPRSNAMLAVKHGVLYVYGGMF
EAGDRQVTLSDLHCLDLHRMEAWKALVEMDPETQEWLEETDSEEDSEEVEGAEGGVDDEDSGEESGAED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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