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Report for CCDS42373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42373.1 Public Homo sapiens 17 RGS9 24 110 108 CCDS HistoryNCBI Gene:8787Re-query CCDS DB by CCDS ID:42373.1Re-query CCDS DB by GeneID:8787See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262406.10 ENSP00000262406.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262406.10Link to Ensembl Protein Viewer:ENSP00000262406.9Re-query CCDS DB by Nucleotide ID:ENST00000262406Re-query CCDS DB by Protein ID:ENSP00000262406
Original member Current member NCBI NM_003835.4 NP_003826.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003835.4Link to Protein Sequence:NP_003826.2Re-query CCDS DB by Nucleotide ID:NM_003835Re-query CCDS DB by Protein ID:NP_003826Link to BLAST:NP_003826.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003826.2 674 O75916-1 674 100% 0 0

Chromosomal Locations for CCDS 42373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 65137541 65137597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65153422 65153518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65158295 65158345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65160233 65160339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65160536 65160587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65160851 65160909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65163013 65163089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65168200 65168281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65177732 65177803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65189286 65189315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65190175 65190236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65193543 65193656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65197126 65197241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65201993 65202080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65204163 65204301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65207922 65208007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65210488 65210605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65225002 65225486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65227275 65227407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2025 nt):
ATGACAATCCGACACCAAGGCCAGCAGTACAGGCCGAGGATGGCATTTCTCCAAAAGATTGAAGCGCTCG
TGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATGCAGAACCAGAGGGTCCTGGTCACCAGCGTTCC
TCATGCCATGACAGGAAGTGATGTTCTGCAATGGATCGTCCAGCGGCTTTGGATCTCCAGTCTGGAGGCA
CAGAACTTGGGCAACTTTATTGTCAGGTATGGCTACATTTACCCCCTGCAAGACCCCAAGAATCTCATTC
TCAAGCCTGATGGCAGCCTCTACAGATTTCAGACACCGTATTTCTGGCCCACCCAGCAGTGGCCAGCTGA
AGATACCGATTACGCCATCTATCTGGCCAAGCGAAATATCAAAAAGAAAGGGATTTTGGAAGAATATGAA
AAGGAAAATTACAATTTCTTGAACCAAAAAATGAACTATAAGTGGGACTTTGTCATTATGCAGGCCAAAG
AGCAGTACAGGGCTGGAAAGGAGAGGAACAAAGCAGACAGATATGCCCTGGACTGCCAGGAGAAGGCATA
CTGGCTGGTGCACCGATGCCCTCCTGGAATGGACAATGTGCTGGACTACGGCCTGGACCGAGTGACCAAT
CCGAATGAAGTCAAGGTAAACCAGAAACAAACAGTCGTTGCTGTCAAAAAAGAGATCATGTATTACCAAC
AGGCCTTGATGAGGTCCACAGTGAAGTCTTCTGTGTCCCTGGGAGGGATTGTGAAATACAGTGAGCAGTT
CTCATCCAACGATGCCATCATGTCAGGCTGCCTCCCCAGCAACCCCTGGATCACCGATGACACCCAGTTC
TGGGACTTAAATGCCAAATTGGTGGAAATCCCAACCAAGATGCGAGTGGAACGATGGGCCTTCAACTTCA
GCGAATTGATCCGAGACCCCAAAGGTCGACAGAGCTTCCAGTACTTCCTCAAGAAAGAATTCAGTGGAGA
GAATCTGGGATTCTGGGAAGCCTGCGAGGATCTGAAGTATGGAGATCAGTCCAAAGTCAAGGAGAAAGCA
GAGGAGATTTACAAGCTGTTCCTGGCCCCGGGGGCGAGGCGCTGGATCAACATAGATGGCAAAACCATGG
ACATCACAGTGAAGGGGCTGAAGCACCCCCACCGCTATGTGCTGGACGCCGCACAAACCCACATTTACAT
GCTCATGAAGAAGGATTCTTATGCTCGCTATTTAAAATCTCCGATCTATAAGGACATGCTGGCCAAAGCT
ATTGAACCTCAGGAAACCACCAAGAAAAGCTCCACCCTCCCTTTTATGCGGCGTCACCTGCGCTCCAGCC
CAAGCCCTGTCATCCTGAGACAGCTGGAAGAGGAAGCCAAGGCCCGAGAAGCAGCCAACACTGTGGACAT
CACCCAGCCGGGCCAGCACATGGCTCCCAGCCCCCATCTGACCGTGTACACCGGGACCTGCATGCCCCCG
TCTCCTTCTAGCCCCTTCTCCTCCTCCTGCCGCTCCCCCAGGAAGCCTTTCGCCTCACCCAGCCGCTTCA
TCCGGCGACCCAGCACCACCATCTGCCCCTCACCCATCAGAGTGGCCTTGGAGAGCTCATCGGGCTTGGA
GCAGAAAGGGGAGTGCAGCGGGTCCATGGCCCCCCGTGGGCCCTCTGTCACCGAGAGCAGCGAGGCCTCC
CTCGACACCTCCTGGCCTCGCAGCCGGCCCAGGGCCCCTCCTAAGGCCCGCATGGCTCTGTCCTTCAGCA
GGTTTCTGAGACGAGGCTGTCTGGCCTCACCTGTCTTTGCCAGGCTCTCACCCAAGTGCCCTGCTGTGTC
CCACGGGAGGGTGCAGCCCCTGGGGGACGTGGGCCAGCAGCTGCCACGATTGAAATCCAAGAGAGTAGCA
AACTTTTTCCAGATCAAAATGGATGTGCCCACGGGGAGCGGGACCTGCTTGATGGACTCGGAGGATGCTG
GAACAGGAGAGTCGGGTGACCGGGCCACAGAAAAGGAGGTCATCTGCCCCTGGGAGAGCCTGTAA

Translation (674 aa):
MTIRHQGQQYRPRMAFLQKIEALVKDMQNPETGVRMQNQRVLVTSVPHAMTGSDVLQWIVQRLWISSLEA
QNLGNFIVRYGYIYPLQDPKNLILKPDGSLYRFQTPYFWPTQQWPAEDTDYAIYLAKRNIKKKGILEEYE
KENYNFLNQKMNYKWDFVIMQAKEQYRAGKERNKADRYALDCQEKAYWLVHRCPPGMDNVLDYGLDRVTN
PNEVKVNQKQTVVAVKKEIMYYQQALMRSTVKSSVSLGGIVKYSEQFSSNDAIMSGCLPSNPWITDDTQF
WDLNAKLVEIPTKMRVERWAFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDLKYGDQSKVKEKA
EEIYKLFLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKDMLAKA
IEPQETTKKSSTLPFMRRHLRSSPSPVILRQLEEEAKAREAANTVDITQPGQHMAPSPHLTVYTGTCMPP
SPSSPFSSSCRSPRKPFASPSRFIRRPSTTICPSPIRVALESSSGLEQKGECSGSMAPRGPSVTESSEAS
LDTSWPRSRPRAPPKARMALSFSRFLRRGCLASPVFARLSPKCPAVSHGRVQPLGDVGQQLPRLKSKRVA
NFFQIKMDVPTGSGTCLMDSEDAGTGESGDRATEKEVICPWESL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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