NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45812.1 Public Homo sapiens 17 NPLOC4 24 110 108 CCDS HistoryNCBI Gene:55666Re-query CCDS DB by CCDS ID:45812.1Re-query CCDS DB by GeneID:55666See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45812.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331134.11 ENSP00000331487.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331134.11Link to Ensembl Protein Viewer:ENSP00000331487.5Re-query CCDS DB by Nucleotide ID:ENST00000331134Re-query CCDS DB by Protein ID:ENSP00000331487
Original member Current member NCBI NM_017921.4 NP_060391.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017921.4Link to Protein Sequence:NP_060391.2Re-query CCDS DB by Nucleotide ID:NM_017921Re-query CCDS DB by Protein ID:NP_060391Link to BLAST:NP_060391.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060391.2 608 Q8TAT6-1 608 100% 0 0

Chromosomal Locations for CCDS 45812.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81559259 81559416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81565505 81565607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81567417 81567533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81569016 81569111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81572017 81572088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81588944 81589104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81596116 81596242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81597245 81597316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81600341 81600427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81604548 81604727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81606691 81606814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81608728 81608822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81610210 81610258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81613318 81613494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81622166 81622278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81629725 81629805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81636916 81636930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGCCGAGAGCATCATAATTCGTGTCCAGTCCCCGGATGGAGTGAAGCGGATCACAGCAACAAAGAGAG
AAACAGCAGCAACATTTTTGAAAAAGGTTGCAAAGGAGTTTGGCTTCCAAAATAATGGCTTCTCGGTTTA
CATCAATAGAAACAAGACCGGAGAGATAACAGCCTCCTCCAACAAATCCCTCAACTTGCTAAAAATCAAG
CATGGCGATTTGTTGTTCCTGTTTCCCTCGAGCCTTGCTGGGCCCTCATCTGAAATGGAGACGTCAGTTC
CACCGGGCTTCAAAGTCTTTGGCGCTCCCAACGTGGTGGAGGATGAGATTGATCAGTACCTCAGCAAACA
GGACGGGAAGATTTACAGAAGCCGAGACCCACAGCTATGCCGCCACGGCCCTTTGGGGAAATGCGTGCAC
TGCGTCCCTCTAGAGCCATTCGATGAGGACTATCTAAACCATCTCGAGCCTCCCGTGAAGCACATGTCCT
TCCACGCCTACATCCGGAAGCTGACTGGAGGGGCTGACAAGGGGAAGTTTGTTGCCCTGGAGAACATCAG
CTGCAAGATTAAGTCAGGGTGCGAGGGGCACCTCCCGTGGCCGAATGGCATCTGTACTAAGTGCCAGCCG
AGCGCCATCACGCTGAACAGACAGAAGTACAGGCATGTGGACAATATCATGTTTGAGAATCACACCGTCG
CTGACCGCTTTCTTGACTTCTGGAGAAAGACAGGGAACCAGCATTTTGGGTACTTATACGGACGGTACAC
GGAGCACAAAGACATTCCCCTTGGCATCAGGGCTGAAGTGGCTGCGATTTATGAGCCACCTCAGATTGGT
ACACAGAACAGCTTGGAGCTTCTTGAGGATCCAAAAGCTGAAGTGGTCGATGAAATTGCTGCCAAACTTG
GCCTGCGGAAGGTTGGCTGGATATTTACAGACCTCGTCTCAGAAGATACCCGAAAGGGTACCGTCCGCTA
CAGTCGAAATAAGGACACCTATTTCCTAAGTTCAGAAGAGTGCATCACTGCAGGAGACTTCCAGAACAAG
CATCCCAACATGTGCCGGCTCTCTCCAGACGGACATTTTGGATCCAAGTTTGTTACTGCAGTGGCTACAG
GTGGTCCTGACAACCAAGTCCACTTTGAAGGGTACCAGGTGTCCAATCAGTGTATGGCACTGGTCCGTGA
TGAGTGTTTGCTGCCATGCAAGGACGCCCCGGAGCTTGGCTACGCCAAGGAGTCTAGCAGTGAGCAGTAC
GTGCCTGATGTGTTTTATAAGGACGTAGACAAGTTTGGCAACGAGATCACCCAGCTGGCCCGGCCCCTGC
CTGTGGAGTATCTCATCATAGACATCACAACAACTTTCCCCAAGGATCCAGTTTACACTTTTTCTATTTC
GCAAAATCCATTTCCTATTGAAAACCGGGATGTATTGGGTGAGACACAGGACTTCCATAGCTTGGCCACC
TATTTGTCTCAGAATACCTCATCTGTGTTCTTGGATACCATCTCAGATTTCCACCTCTTGCTGTTCCTGG
TCACCAATGAAGTTATGCCTCTGCAGGACAGCATCAGCTTGCTGCTGGAGGCCGTGCGGACCAGAAATGA
GGAGCTCGCCCAGACATGGAAGAGGTCTGAGCAGTGGGCCACCATCGAGCAGCTGTGCAGCACAGTTGGC
GGGCAGCTCCCAGGTCTCCATGAGTACGGCGCCGTCGGGGGCTCCACACACACGGCCACTGCAGCCATGT
GGGCCTGTCAGCACTGCACGTTCATGAACCAGCCAGGCACAGGCCACTGCGAGATGTGCAGCCTCCCCAG
GACCTAG

Translation (608 aa):
MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSNKSLNLLKIK
HGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVH
CVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKFVALENISCKIKSGCEGHLPWPNGICTKCQP
SAITLNRQKYRHVDNIMFENHTVADRFLDFWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIG
TQNSLELLEDPKAEVVDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNK
HPNMCRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLAT
YLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSEQWATIEQLCSTVG
GQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQPGTGHCEMCSLPRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH