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Report for CCDS45869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45869.1 Public Homo sapiens 18 MRO 24 110 108 CCDS HistoryNCBI Gene:83876Re-query CCDS DB by CCDS ID:45869.1Re-query CCDS DB by GeneID:83876See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45869.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588444.5 ENSP00000465653.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588444.5Link to Ensembl Protein Viewer:ENSP00000465653.1Re-query CCDS DB by Nucleotide ID:ENST00000588444Re-query CCDS DB by Protein ID:ENSP00000465653
Original member Current member NCBI NM_001127174.3 NP_001120646.1 Accepted alive Link to Nucleotide Sequence:NM_001127174.3Link to Protein Sequence:NP_001120646.1Re-query CCDS DB by Nucleotide ID:NM_001127174Re-query CCDS DB by Protein ID:NP_001120646Link to BLAST:NP_001120646.1
Original member Current member NCBI NM_001369511.2 NP_001356440.1 Accepted alive Link to Nucleotide Sequence:NM_001369511.2Link to Protein Sequence:NP_001356440.1Re-query CCDS DB by Nucleotide ID:NM_001369511Re-query CCDS DB by Protein ID:NP_001356440Link to BLAST:NP_001356440.1
Original member Current member NCBI NM_001369515.2 NP_001356444.1 Accepted alive Link to Nucleotide Sequence:NM_001369515.2Link to Protein Sequence:NP_001356444.1Re-query CCDS DB by Nucleotide ID:NM_001369515Re-query CCDS DB by Protein ID:NP_001356444Link to BLAST:NP_001356444.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120646.1 196 Q9BYG7-6 196 100% 0 0
NP_001356440.1 196 Q9BYG7-6 196 100% 0 0
NP_001356444.1 196 Q9BYG7-6 196 100% 0 0

Chromosomal Locations for CCDS 45869.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 50799337 50799390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50800036 50800143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50805154 50805336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50806704 50806850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50809302 50809400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGACCAAAGACAGAGGAGAATCCTGGGCCAGCCCCTTTCCATCCCTACTTCCCAGCCCAAGCAGAAAA
GGACATCAATGATATCTTTCTTTTCCAAGGTCTCTTGGAAACTGAGGTTCCAGAAGCGGGAGCCTCTGAA
GAATGTGTTTTTCATCTTGGCAGAAAGAGCTCGGGACCCCAGTGCTAAAAAGCGTCACATGGCAATGAGA
AACTTGGGAACCATGGCCTATGAAGCCCCTGACAAGGTGAGAAAGTATAAGAAAATTGTCCTCGACCTGC
TGGTGTATGGACTGTATGACCCTGTGAATTTGGAAGTCATCCATGAGAGTATGAAGACTCTGACCGTCGT
TCTGGGCAAGATCCAGGGGAAAGGTTTGGGTTCCTTCTTCATAGATATCACCCTTCAGACCAGGACTTTA
TTAGATGACGCTTGCAAAACAACATTTCAAGCCTGTTCTCCATATCTGAAACTAAAGGAGGAATACAGCT
TCCAGAGTGAAGAAGATCAAAGGAACACTAAGCTCTACCAGCAGCTGAGCCACTATCATCCAGAGATCCT
GCAGTTCTTCTACGCAAATAAAATTCTGTAA

Translation (196 aa):
MDQRQRRILGQPLSIPTSQPKQKRTSMISFFSKVSWKLRFQKREPLKNVFFILAERARDPSAKKRHMAMR
NLGTMAYEAPDKVRKYKKIVLDLLVYGLYDPVNLEVIHESMKTLTVVLGKIQGKGLGSFFIDITLQTRTL
LDDACKTTFQACSPYLKLKEEYSFQSEEDQRNTKLYQQLSHYHPEILQFFYANKIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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