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Report for CCDS12129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12129.1 Public Homo sapiens 19 UBXN6 24 110 108 CCDS HistoryNCBI Gene:80700Re-query CCDS DB by CCDS ID:12129.1Re-query CCDS DB by GeneID:80700See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12129.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301281.11 ENSP00000301281.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301281.11Link to Ensembl Protein Viewer:ENSP00000301281.5Re-query CCDS DB by Nucleotide ID:ENST00000301281Re-query CCDS DB by Protein ID:ENSP00000301281
Original member Current member NCBI NM_025241.3 NP_079517.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025241.3Link to Protein Sequence:NP_079517.1Re-query CCDS DB by Nucleotide ID:NM_025241Re-query CCDS DB by Protein ID:NP_079517Link to BLAST:NP_079517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079517.1 441 Q9BZV1-1 441 100% 0 0

Chromosomal Locations for CCDS 12129.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4445498 4445623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4446049 4446197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4446283 4446413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4446500 4446719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4446836 4446920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4447550 4447625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4448318 4448415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4452364 4452492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4453458 4453522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4453930 4454093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4457615 4457697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGAAGAAATTCTTTCAGGAGTTCAAGGCCGACATCAAGTTCAAGAGCGCGGGACCCGGTCAGAAGCTCA
AAGAGTCCGTGGGGGAAAAGGCCCACAAAGAGAAGCCCAACCAGCCAGCCCCCAGGCCGCCCCGCCAGGG
ACCCACCAATGAGGCACAGATGGCAGCCGCTGCCGCCCTAGCCCGGCTGGAGCAGAAGCAGTCCCGGGCC
TGGGGCCCCACATCGCAGGACACCATCCGAAACCAGGTGAGAAAGGAACTTCAAGCCGAAGCCACCGTCA
GCGGGAGCCCCGAGGCCCCAGGGACCAACGTGGTATCTGAGCCCAGAGAGGAAGGCTCTGCCCACCTGGC
TGTGCCTGGCGTGTACTTCACCTGTCCGCTCACTGGGGCCACCCTGAGGAAGGACCAGCGGGACGCCTGC
ATCAAGGAGGCCATTCTCTTGCACTTCTCCACCGACCCAGTGGCCGCCTCCATCATGAAGATCTACACGT
TCAACAAAGACCAGGACCGGGTGAAGCTGGGTGTGGACACCATTGCCAAGTACCTGGACAACATCCACCT
GCACCCCGAGGAGGAGAAGTACCGGAAGATCAAGCTGCAGAACAAGGTGTTTCAGGAGCGCATTAACTGC
CTGGAAGGGACCCACGAGTTTTTTGAGGCCATTGGGTTCCAGAAGGTGTTGCTTCCCGCCCAGGATCAGG
AGGACCCCGAGGAGTTCTACGTGCTGAGCGAGACCACCTTGGCCCAGCCCCAGAGCCTGGAGAGGCACAA
GGAACAGCTGCTGGCTGCGGAGCCCGTGCGCGCCAAGCTGGACAGGCAGCGCCGCGTCTTCCAGCCCTCG
CCCCTGGCCTCGCAGTTCGAACTGCCTGGGGACTTCTTCAACCTCACAGCAGAGGAGATCAAGCGGGAGC
AGAGGCTCAGGTCCGAGGCGGTGGAGCGGCTGAGCGTGCTGCGGACCAAGGCCATGCGGGAGAAGGAGGA
GCAGCGGGGGCTGCGCAAGTACAACTACACGCTGCTGCGCGTGCGCCTCCCCGATGGCTGCCTCCTGCAG
GGCACTTTCTACGCTCGGGAGCGGCTGGGGGCGGTGTACGGGTTCGTCCGGGAGGCCCTGCAGAGCGACT
GGCTGCCTTTTGAGCTGCTGGCCTCGGGAGGGCAGAAGCTGTCCGAGGACGAGAACCTGGCCTTGAACGA
GTGCGGGCTGGTGCCCTCTGCCCTCCTGACCTTCTCGTGGGACATGGCTGTGCTGGAGGACATCAAGGCC
GCGGGGGCCGAGCCGGACTCCATCCTGAAACCCGAGCTCCTGTCAGCCATCGAGAAGCTCTTGTGA

Translation (441 aa):
MKKFFQEFKADIKFKSAGPGQKLKESVGEKAHKEKPNQPAPRPPRQGPTNEAQMAAAAALARLEQKQSRA
WGPTSQDTIRNQVRKELQAEATVSGSPEAPGTNVVSEPREEGSAHLAVPGVYFTCPLTGATLRKDQRDAC
IKEAILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINC
LEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPS
PLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQ
GTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAVLEDIKA
AGAEPDSILKPELLSAIEKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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