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Report for CCDS77231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77231.1 Public Homo sapiens 19 SHFL 24 110 108 CCDS HistoryNCBI Gene:55337Re-query CCDS DB by CCDS ID:77231.1Re-query CCDS DB by GeneID:55337See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77231.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000591813.5 ENSP00000467182.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591813.5Link to Ensembl Protein Viewer:ENSP00000467182.1Re-query CCDS DB by Nucleotide ID:ENST00000591813Re-query CCDS DB by Protein ID:ENSP00000467182
Original member Current member NCBI NM_001308277.2 NP_001295206.1 Accepted alive Link to Nucleotide Sequence:NM_001308277.2Link to Protein Sequence:NP_001295206.1Re-query CCDS DB by Nucleotide ID:NM_001308277Re-query CCDS DB by Protein ID:NP_001295206Link to BLAST:NP_001295206.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295206.1 255 Q9NUL5-4 255 100% 0 0

Chromosomal Locations for CCDS 77231.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10086428 10086448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10086929 10087052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10087251 10087300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10089657 10089695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10089898 10090047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10091250 10091353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10091584 10091630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10092070 10092302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGTCTCAGGAAGGTGTGGAGCTGGAGAAGAGCGTCCGGCGCCTCCGGGAGAAGTTTCATGGGAAGGTAT
CCTCCAAGAAGGCGGGGGCTCTGATGAGGAAATTCGGCAGCGACCACACGGGAGTGGGGCGCTCCATCGT
GTACGGGGTAAAGCAAAAAGATGGCCAAGAACTAAGTAACGATCTGGATGCCCAGGATCCACCAGAAGAT
ATGAAGCAGGACCGGGACATTCAGGCAGTGGCGACCTCCCTCCTGCCACTGACAGAAGCCAACCTACGCA
TGTTTCAACGTGCCCAGGACGACCTTATCCCTGCTGTGGACCGGCAGTTTGCCTGCTCCTCCTGCGACCA
CGTCTGGTGGCGCCGCGTGCCCCAGCGGAAGGAGGTATCCCGGTGCCGGAAATGCCGGAAGCGCTACGAG
CCAGTGCCAGCTGACAAGATGTGGGGCCTGGCTGAGTTCCACTGCCCGAAGTGTCGGCACAACTTCCGCA
CCCACACTCACTCCTGCTCAGCTGCCGACTGCTACAACCGGCGAGAGCCCCACGTGCCTGGGACATCCTG
TGCTCACCCCAAGAGCCGGAAGCAGAACCACCTGCCCAAAGTGCTCCACCCCAGCAACCCTCACATTAGC
AGTGGCTCCACTGTGGCCACCTGCTTGAGCCAGGGTGGCCTCCTGGAAGACCTGGACAACCTCATCCTGG
AGGACCTGAAGGAGGAGGAGGAGGAAGAGGAGGAGGTGGAGGACGAGGAGGGCGGGCCCAGGGAGTGA

Translation (255 aa):
MSQEGVELEKSVRRLREKFHGKVSSKKAGALMRKFGSDHTGVGRSIVYGVKQKDGQELSNDLDAQDPPED
MKQDRDIQAVATSLLPLTEANLRMFQRAQDDLIPAVDRQFACSSCDHVWWRRVPQRKEVSRCRKCRKRYE
PVPADKMWGLAEFHCPKCRHNFRTHTHSCSAADCYNRREPHVPGTSCAHPKSRKQNHLPKVLHPSNPHIS
SGSTVATCLSQGGLLEDLDNLILEDLKEEEEEEEEVEDEEGGPRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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