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Report for CCDS46020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46020.1 Public Homo sapiens 19 CERS1 24 110 108 CCDS HistoryNCBI Gene:10715Re-query CCDS DB by CCDS ID:46020.1Re-query CCDS DB by GeneID:10715See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 46020.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000623882.4 ENSP00000485308.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000623882.4Link to Ensembl Protein Viewer:ENSP00000485308.1Re-query CCDS DB by Nucleotide ID:ENST00000623882Re-query CCDS DB by Protein ID:ENSP00000485308
Original member Current member NCBI NM_001387440.1 NP_001374369.1 Accepted alive Link to Nucleotide Sequence:NM_001387440.1Link to Protein Sequence:NP_001374369.1Re-query CCDS DB by Nucleotide ID:NM_001387440Re-query CCDS DB by Protein ID:NP_001374369Link to BLAST:NP_001374369.1
Original member Current member NCBI NM_021267.5 NP_067090.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021267.5Link to Protein Sequence:NP_067090.1Re-query CCDS DB by Nucleotide ID:NM_021267Re-query CCDS DB by Protein ID:NP_067090Link to BLAST:NP_067090.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001374369.1 350 P27544-1 350 100% 0 0
NP_067090.1 350 P27544-1 350 100% 0 0

Chromosomal Locations for CCDS 46020.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18870577 18870619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18878930 18879039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18879241 18879388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18880274 18880435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18884087 18884267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18893416 18893575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18895824 18896072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCGGCGGCGGGGCCCGCGGCGGGGCCGACGGGGCCCGAGCCCATGCCGAGCTACGCGCAGCTAGTGC
AGCGCGGCTGGGGCAGCGCGCTGGCGGCGGCGCGGGGCTGCACGGACTGCGGCTGGGGGCTGGCGCGTCG
CGGCCTGGCTGAGCACGCGCACCTGGCGCCGCCCGAGCTGCTGCTGCTGGCGCTCGGCGCGCTGGGCTGG
ACCGCCCTGCGCTCCGCGGCCACTGCGCGCCTCTTTCGGCCCCTGGCGAAGCGGTGCTGCCTCCAGCCCA
GAGATGCCGCCAAGATGCCCGAGAGCGCTTGGAAGTTTCTCTTCTACCTGGGCAGCTGGAGCTACAGTGC
CTACCTGCTGTTTGGCACCGACTACCCCTTCTTCCATGACCCACCATCTGTCTTCTACGACTGGACGCCG
GGCATGGCAGTGCCACGGGACATTGCAGCCGCCTACCTGCTCCAGGGAAGCTTCTATGGCCACTCCATCT
ACGCTACGCTATACATGGACACCTGGCGCAAGGACTCGGTGGTCATGCTGCTCCACCACGTGGTCACTCT
CATCCTCATCGTCTCCTCCTACGCCTTCCGGTACCACAATGTGGGCATCCTTGTGCTCTTCCTGCACGAT
ATCAGTGACGTGCAGCTTGAGTTCACCAAGCTCAACATTTACTTCAAGTCCCGCGGCGGCTCCTACCATC
GGCTGCATGCCTTGGCAGCAGACTTGGGCTGCCTCAGCTTCGGCTTCAGCTGGTTCTGGTTCCGCCTCTA
CTGGTTCCCGCTCAAGGTCCTGTATGCCACCAGTCACTGCAGTCTGCGCACGGTGCCTGACATCCCCTTC
TACTTCTTCTTCAATGCGCTCCTGCTGCTGCTCACCCTTATGAACCTCTACTGGTTCCTGTACATCGTGG
CGTTTGCAGCCAAGGTGTTGACAGGCCAGGTGCACGAGCTGAAGGACCTGCGGGAGTATGACACAGCCGA
GGCCCAGAGCCTGAAGCCCAGCAAAGCCGAGAAGCCACTGAGGAACGGCCTGGTGAAGGACAAGCGCTTC
TGA

Translation (350 aa):
MAAAGPAAGPTGPEPMPSYAQLVQRGWGSALAAARGCTDCGWGLARRGLAEHAHLAPPELLLLALGALGW
TALRSAATARLFRPLAKRCCLQPRDAAKMPESAWKFLFYLGSWSYSAYLLFGTDYPFFHDPPSVFYDWTP
GMAVPRDIAAAYLLQGSFYGHSIYATLYMDTWRKDSVVMLLHHVVTLILIVSSYAFRYHNVGILVLFLHD
ISDVQLEFTKLNIYFKSRGGSYHRLHALAADLGCLSFGFSWFWFRLYWFPLKVLYATSHCSLRTVPDIPF
YFFFNALLLLLTLMNLYWFLYIVAFAAKVLTGQVHELKDLREYDTAEAQSLKPSKAEKPLRNGLVKDKRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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