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Report for CCDS12648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12648.1 Public Homo sapiens 19 APOC1 24 110 108 CCDS HistoryNCBI Gene:341Re-query CCDS DB by CCDS ID:12648.1Re-query CCDS DB by GeneID:341See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12648.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588750.5 ENSP00000465356.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588750.5Link to Ensembl Protein Viewer:ENSP00000465356.1Re-query CCDS DB by Nucleotide ID:ENST00000588750Re-query CCDS DB by Protein ID:ENSP00000465356
Original member Current member EBI ENST00000588802.5 ENSP00000468029.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588802.5Link to Ensembl Protein Viewer:ENSP00000468029.1Re-query CCDS DB by Nucleotide ID:ENST00000588802Re-query CCDS DB by Protein ID:ENSP00000468029
Original member Current member EBI ENST00000592535.6 ENSP00000468276.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000592535.6Link to Ensembl Protein Viewer:ENSP00000468276.2Re-query CCDS DB by Nucleotide ID:ENST00000592535Re-query CCDS DB by Protein ID:ENSP00000468276
Original member Current member NCBI NM_001321065.2 NP_001307994.1 Accepted alive Link to Nucleotide Sequence:NM_001321065.2Link to Protein Sequence:NP_001307994.1Re-query CCDS DB by Nucleotide ID:NM_001321065Re-query CCDS DB by Protein ID:NP_001307994Link to BLAST:NP_001307994.1
Original member Current member NCBI NM_001321066.2 NP_001307995.1 Accepted alive Link to Nucleotide Sequence:NM_001321066.2Link to Protein Sequence:NP_001307995.1Re-query CCDS DB by Nucleotide ID:NM_001321066Re-query CCDS DB by Protein ID:NP_001307995Link to BLAST:NP_001307995.1
Original member Current member NCBI NM_001645.5 NP_001636.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001645.5Link to Protein Sequence:NP_001636.1Re-query CCDS DB by Nucleotide ID:NM_001645Re-query CCDS DB by Protein ID:NP_001636Link to BLAST:NP_001636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307994.1 83 P02654 83 100% 0 0
NP_001307995.1 83 P02654 83 100% 0 0
NP_001636.1 83 P02654 83 100% 0 0

Chromosomal Locations for CCDS 12648.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44914892 44914949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44916190 44916325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44919173 44919230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (252 nt):
ATGAGGCTCTTCCTGTCGCTCCCGGTCCTGGTGGTGGTTCTGTCGATCGTCTTGGAAGGCCCAGCCCCAG
CCCAGGGGACCCCAGACGTCTCCAGTGCCTTGGATAAGCTGAAGGAGTTTGGAAACACACTGGAGGACAA
GGCTCGGGAACTCATCAGCCGCATCAAACAGAGTGAACTTTCTGCCAAGATGCGGGAGTGGTTTTCAGAG
ACATTTCAGAAAGTGAAGGAGAAACTCAAGATTGACTCATGA

Translation (83 aa):
MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTLEDKARELISRIKQSELSAKMREWFSE
TFQKVKEKLKIDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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