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Report for CCDS1878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1878.1 Public Homo sapiens 2 AFTPH 24 110 108 CCDS HistoryNCBI Gene:54812Re-query CCDS DB by CCDS ID:1878.1Re-query CCDS DB by GeneID:54812See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238856.8 ENSP00000238856.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000238856.8Link to Ensembl Protein Viewer:ENSP00000238856.4Re-query CCDS DB by Nucleotide ID:ENST00000238856Re-query CCDS DB by Protein ID:ENSP00000238856
Original member Current member NCBI NM_017657.5 NP_060127.3 Accepted alive Link to Nucleotide Sequence:NM_017657.5Link to Protein Sequence:NP_060127.3Re-query CCDS DB by Nucleotide ID:NM_017657Re-query CCDS DB by Protein ID:NP_060127Link to BLAST:NP_060127.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060127.3 909 Q6ULP2-6 909 100% 0 0

Chromosomal Locations for CCDS 1878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 64551475 64553409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64567562 64567713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64569092 64569218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64569623 64569679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64572946 64573068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64579486 64579546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64585422 64585545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 64591885 64592035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2730 nt):
ATGGAGCCAGACATCATTCGAATGTACTCTTCATCCCCACCACCATTAGACAATGGAGCAGAGGATGATG
ATGATGATGAATTTGGGGAATTTGGTGGGTTTTCAGAAGTTAGCCCTTCTGGTGTAGGGTTTGTTGATTT
CGATACACCAGATTATACTCGTCCCAAGGAAGAGTTTGTACCTTCAAACCATTTTATGCCAATTCATGAA
TTCTCAGAAAATGTAGATAGCCTTACAAGCTTTAAGTCCATTAAAAATGGTAATGATAAGGACATCACTG
CTGAACTTTCTGCTCCTGTGAAAGGACAGTCTGATGTTTTACTTTCTACCACCAGCAAAGAAATAATTTC
ATCTGAAATGTTAGCTACTTCCATTGATGGCATGGAAAGACCAGGAAATTTAAATAAAGTAGTGGAGCAG
AGACAGAATGTTGGAACACTTGAAAGTTTCTCTCCAGGAGATTTTAGAACTAATATGAATGTTGTTCATC
AAAACAAGCAGTTAGAGAGCTGCAATGGTGAAAAGCCTCCTTGTCTGGAGATTCTAACAAATGGGTTTGC
AGTGTTGGAAACTGTAAATCCTCAGGGAACAGATGATCTGGACAATGTAGCTGATTCAAAGGGACGGAAG
CCTCTTAGCACTCATAGCACTGAGTATAATTTAGACTCTGTACCTAGTCCTGCTGAGGAATTTGCAGATT
TTGCCACATTTTCCAAAAAGGAAAGGATACAATTAGAAGAAATAGAATGTGCAGTTTTAAATGATAGAGA
AGCACTAACCATTCGGGAAAACAATAAAATTAATAGAGTCAATGAACTGAATTCTGTAAAAGAAGTGGCT
TTGGGTAGAAGCTTGGATAACAAAGGAGACACTGATGGAGAGGATCAGGTTTGTGTTTCAGAAATAAGCA
TAGTGACTAACAGAGGTTTCAGTGTTGAAAAACAAGGCCTTCCAACACTGCAACAGGATGAATTTTTACA
GTCAGGTGTTCAGTCAAAGGCTTGGAGTTTGGTAGACTCAGCTGATAATTCAGAAGCCATTAGGAGAGAA
CAATGTAAAACTGAAGAAAAACTTGACTTACTTACTTCTAAATGTGCTCACCTATGCATGGATTCTGTTA
AAACTTCTGATGATGAAGTTGGTTCTCCCAAAGAAGAAAGTAGAAAGTTTACTAATTTCCAAAGCCCAAA
CATTGACCCCACAGAAGAAAATGATTTGGATGATTCTTTAAGTGTAAAAAATGGTGATAGTAGTAATGAC
TTTGTGACTTGCAATGATATCAATGAAGATGATTTTGGTGATTTTGGTGACTTTGGCTCTGCCAGTGGCT
CAACTCCACCTTTTGTTACTGGTACTCAAGATTCAATGAGTGATGCCACTTTTGAAGAGTCTTCAGAGCA
CTTTCCACATTTTAGTGAACCAGGTGATGACTTTGGAGAATTTGGGGATATAAATGCTGTTTCTTGCCAA
GAGGAGACAATATTAACAAAGTCAGACCTAAAACAGACTTCTGATAATTTATCAGAAGAATGTCAATTGG
CAAGAAAATCTAGTGGAACAGGCACTGAACCTGTTGCAAAACTTAAAAATGGGCAAGAAGGTGAGATTGG
ACATTTTGATTCTGTGCCAAATATTCAGGATGACTGCAATGGTTTTCAAGACTCTGATGATTTTGCAGAC
TTCAGTTCAGCTGGTCCTAGCCAAGTTGTAGATTGGAATGCTTTTGAGGATGAACAAAAAGATAGTTGTT
CTTGGGCTGCTTTTGGAGACCAGCAGGCTACTGAATCTCATCATCGAAAGGAAGCCTGGCAGTCACATAG
GACAGATGAAAATATTGATACTCCAGGAACCCCCAAAACGCACAGTGTACCTTCAGCAACTTCCAAAGGA
GCAGTTGCTAGTGGCCATTTACAGGAATCAGCCACTTCAGTTCAGACAGCTTTATTAAACCGCCTGGAGC
GAATTTTCGAAGCATGTTTTCCTTCCATACTTGTCCCTGATGCTGAAGAGGAAGTTACTTCCCTGAAGCA
CTTGCTGGAAACAAGCACTTTGCCAATAAAAACGAGAGAGGCCTTACCTGAAAGTGGGGAATTGCTAGAT
GTGTGGACTGAGCTACAGGATATCCATGATGCACATGGCTTGAGATACCAGTGGGGCGGCTCCCATAGCA
ACAAGAAGCTTTTGTCCTCCTTGGGAATAGACACCCGAAACATTCTCTTCACGGGCAATAAGAAGCAGCC
TGTTATAGTGCCCATGTATGCAGCAGGATTGGGTATGTTAGAGCCCACCAAGGAACCACTGAAACCACTT
TCTGCTGCAGAAAAAATAGCTTCCATCGGTCAGACAGCCACCATGTCACCAGATATGAACACATGTACAT
CTGATCAGTTCCAGGAGTCTCTACCACCCGTCCAGTTTGACTGGAGTAGCAGTGGCCTTACTAACCCTTT
AGATGGTGTGGATCCGGAGTTGTATGAGTTAACAACTTCTAAGCTGGAAATCTCCACCTCAAGCCTCAAA
GTGACTGATGCATTTGCAAGACTCATGTCTACAGTAGAGAAGACAAGCACATCTACCAGTAGGAAACCGA
AAAGAGAAGAGCACCTAAGTGAAGAAGCTATCAAGGTGATCGCTGGCCTTCCTGACTTAACATTCATGCA
TGCCAAGGTGTTGATGTTCCCAGCCACGTTAACACCTTCCACAAGCTCTCAAGAAAAAGCAGACGGATAA

Translation (909 aa):
MEPDIIRMYSSSPPPLDNGAEDDDDDEFGEFGGFSEVSPSGVGFVDFDTPDYTRPKEEFVPSNHFMPIHE
FSENVDSLTSFKSIKNGNDKDITAELSAPVKGQSDVLLSTTSKEIISSEMLATSIDGMERPGNLNKVVEQ
RQNVGTLESFSPGDFRTNMNVVHQNKQLESCNGEKPPCLEILTNGFAVLETVNPQGTDDLDNVADSKGRK
PLSTHSTEYNLDSVPSPAEEFADFATFSKKERIQLEEIECAVLNDREALTIRENNKINRVNELNSVKEVA
LGRSLDNKGDTDGEDQVCVSEISIVTNRGFSVEKQGLPTLQQDEFLQSGVQSKAWSLVDSADNSEAIRRE
QCKTEEKLDLLTSKCAHLCMDSVKTSDDEVGSPKEESRKFTNFQSPNIDPTEENDLDDSLSVKNGDSSND
FVTCNDINEDDFGDFGDFGSASGSTPPFVTGTQDSMSDATFEESSEHFPHFSEPGDDFGEFGDINAVSCQ
EETILTKSDLKQTSDNLSEECQLARKSSGTGTEPVAKLKNGQEGEIGHFDSVPNIQDDCNGFQDSDDFAD
FSSAGPSQVVDWNAFEDEQKDSCSWAAFGDQQATESHHRKEAWQSHRTDENIDTPGTPKTHSVPSATSKG
AVASGHLQESATSVQTALLNRLERIFEACFPSILVPDAEEEVTSLKHLLETSTLPIKTREALPESGELLD
VWTELQDIHDAHGLRYQWGGSHSNKKLLSSLGIDTRNILFTGNKKQPVIVPMYAAGLGMLEPTKEPLKPL
SAAEKIASIGQTATMSPDMNTCTSDQFQESLPPVQFDWSSSGLTNPLDGVDPELYELTTSKLEISTSSLK
VTDAFARLMSTVEKTSTSTSRKPKREEHLSEEAIKVIAGLPDLTFMHAKVLMFPATLTPSTSSQEKADG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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