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Report for CCDS54382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54382.1 Public Homo sapiens 2 LIMS1 24 110 108 CCDS HistoryNCBI Gene:3987Re-query CCDS DB by CCDS ID:54382.1Re-query CCDS DB by GeneID:3987See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54382.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544547.6 ENSP00000437912.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000544547.6Link to Ensembl Protein Viewer:ENSP00000437912.1Re-query CCDS DB by Nucleotide ID:ENST00000544547Re-query CCDS DB by Protein ID:ENSP00000437912
Original member Current member NCBI NM_001193483.3 NP_001180412.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193483.3Link to Protein Sequence:NP_001180412.1Re-query CCDS DB by Nucleotide ID:NM_001193483Re-query CCDS DB by Protein ID:NP_001180412Link to BLAST:NP_001180412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180412.1 337 P48059-2 337 100% 0 0

Chromosomal Locations for CCDS 54382.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 108534563 108534594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108659605 108659764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108670781 108670847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108672325 108672445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108672880 108673029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108675878 108676028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108676606 108676698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108677979 108678027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108680695 108680770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 108683885 108683999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGCTGGGCGTGGCGGCCGGGATGACCCACAGCAACATGGCCAACGCCCTGGCCAGCGCCACTTGCGAGC
GCTGCAAGGGCGGCTTTGCGCCCGCTGAGAAGATCGTGAACAGTAATGGGGAGCTGTACCATGAGCAGTG
TTTCGTGTGCGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTCTATGAGTTTGAAGGAAGAAAGTAC
TGTGAACATGACTTTCAGATGCTCTTTGCCCCTTGCTGTCATCAGTGTGGTGAATTCATCATTGGCCGAG
TTATCAAAGCCATGAATAACAGCTGGCATCCGGAGTGCTTCCGCTGTGACCTCTGCCAGGAAGTTCTGGC
AGATATCGGGTTTGTCAAGAATGCTGGGAGACACCTGTGTCGCCCCTGTCATAATCGTGAGAAAGCCAGA
GGCCTTGGGAAATACATCTGCCAGAAATGCCATGCTATCATCGATGAGCAGCCTCTGATATTCAAGAACG
ACCCCTACCATCCAGACCATTTCAACTGCGCCAACTGCGGGAAGGAGCTGACTGCCGATGCACGGGAGCT
GAAAGGGGAGCTATACTGCCTCCCATGCCATGATAAAATGGGGGTCCCCATCTGTGGTGCTTGCCGACGG
CCCATCGAAGGGCGCGTGGTGAACGCTATGGGCAAGCAGTGGCATGTGGAGCATTTTGTTTGTGCCAAGT
GTGAGAAACCCTTTCTTGGACATCGCCATTATGAGAGGAAAGGCCTGGCATATTGTGAAACTCACTATAA
CCAGCTATTTGGTGATGTTTGCTTCCACTGCAATCGTGTTATAGAAGGTGATGTGGTCTCTGCTCTTAAT
AAGGCCTGGTGCGTGAACTGCTTTGCCTGTTCTACCTGCAACACTAAATTAACACTCAAGAATAAGTTTG
TGGAGTTTGACATGAAGCCAGTCTGTAAGAAGTGCTATGAGAAATTTCCATTGGAGCTGAAGAAAAGACT
TAAGAAACTAGCTGAGACCTTAGGAAGGAAATAA

Translation (337 aa):
MLGVAAGMTHSNMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKY
CEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAR
GLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRR
PIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALN
KAWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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