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Report for CCDS2084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2084.1 Public Homo sapiens 2 LIMS3 24 110 108 CCDS HistoryNCBI Gene:96626Re-query CCDS DB by CCDS ID:2084.1Re-query CCDS DB by GeneID:96626See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2084.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000437679.3 ENSP00000405165.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437679.3Link to Ensembl Protein Viewer:ENSP00000405165.2Re-query CCDS DB by Nucleotide ID:ENST00000437679Re-query CCDS DB by Protein ID:ENSP00000405165
Original member Current member NCBI NM_033514.5 NP_277049.1 Accepted alive Link to Nucleotide Sequence:NM_033514.5Link to Protein Sequence:NP_277049.1Re-query CCDS DB by Nucleotide ID:NM_033514Re-query CCDS DB by Protein ID:NP_277049Link to BLAST:NP_277049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_277049.1 117 P0CW19-1 117 100% 0 0

Chromosomal Locations for CCDS 2084.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 109898729 109898910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109903253 109903412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109905880 109905891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGCCTTCTCAGGCCGAGCGCGCCCCTGCATTATCCCAGAGAACGAAGAAATCCCCCGAGCAGCCCTTA
ACACTGTCCACGAGGCCAATGGGACCGAGGACGAGAGGGCTGTTTCCAAACTGCAGCGCAGGCACAGTGA
CGTGAAAGTCTACAAGGAGTTCTGTGACTTTTATGCGAAATTCAACATGGCCAACGCCCTGGCCAGCGCC
ACTTGCGAGCGCTGCAAGGGCGGCTTTGCGCCCGCTGAGACGATCGTGAACAGTAATGGGGAGCTGTACC
ATGAGCAGTGTTTCGTGTGCGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTCTATGAGGAACGAAC
GTGA

Translation (117 aa):
MAFSGRARPCIIPENEEIPRAALNTVHEANGTEDERAVSKLQRRHSDVKVYKEFCDFYAKFNMANALASA
TCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYEERT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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