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Report for CCDS54420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54420.1 Public Homo sapiens 2 SCRN3 24 110 108 CCDS HistoryNCBI Gene:79634Re-query CCDS DB by CCDS ID:54420.1Re-query CCDS DB by GeneID:79634See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54420.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409673.7 ENSP00000387142.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409673.7Link to Ensembl Protein Viewer:ENSP00000387142.3Re-query CCDS DB by Nucleotide ID:ENST00000409673Re-query CCDS DB by Protein ID:ENSP00000387142
Original member Current member NCBI NM_001193528.2 NP_001180457.1 Accepted alive Link to Nucleotide Sequence:NM_001193528.2Link to Protein Sequence:NP_001180457.1Re-query CCDS DB by Nucleotide ID:NM_001193528Re-query CCDS DB by Protein ID:NP_001180457Link to BLAST:NP_001180457.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180457.1 417 Q0VDG4-2 417 100% 0 0

Chromosomal Locations for CCDS 54420.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 174395757 174395817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174398366 174398442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174399922 174400103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174400990 174401189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174404103 174404315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174422885 174423047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174424475 174424649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174427713 174427895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGCCTCCACTGGCCACTCCTCCCTCCGTCCACCTGTCACTTCGGGTAGCTGGGAGGCCAGATAGACTCT
ATGATGAAGTACAAGAGGTGGTTTATTTTCCTGCTGTAGTTCATGATAACCTGGGAGAACGTCTTAAGTG
TACATATATAGAAATTGATCAAGTTCCTGAAACATATGCTGTTGTCCTGAGTCGCCCAGCGTGGTTGTGG
GGGGCAGAAATGGGAGCCAATGAGCATGGAGTTTGCATTGGGAATGAAGCTGTATGGGGAAGAGAAGAAG
TTTGTGATGAAGAAGCACTATTAGGAATGGACCTTGTCAGACTTGGCCTTGAAAGAGCTGATACAGCTGA
AAAAGCCCTCAATGTCATTGTTGACTTACTAGAAAAATATGGCCAGGGTGGAAATTGCACAGAGGGTAGA
ATGGTATTTAGCTATCACAACAGTTTCCTGATAGCTGATAGGAATGAAGCCTGGATTCTGGAGACTGCAG
GGAAGTACTGGGCAGCAGAAAAAGTACAAGAGGGAGTTCGTAATATTTCTAATCAACTTTCCATAACAAC
CAAGATTGCCCGGGAACACCCAGACATGAGAAACTATGCTAAGCGGAAAGGTTGGTGGGATGGTAAAAAG
GAGTTTGATTTTGCTGCAGCATATTCCTATCTTGACACAGCCAAGATGATGACTTCATCAGGCAGATACT
GTGAGGGCTACAAGCTTCTAAATAAGCACAAAGGAAATATAACTTTTGAAACAATGATGGAAATTCTTCG
AGATAAACCAAGTGGCATTAATATGGAGGGAGAATTCCTGACCACTGCAAGCATGGTTTCTATTTTACCT
CAAGACTCCAGCCTTCCTTGCATTCACTTCTTTACAGGGACTCCTGATCCTGAGAGATCTGTTTTTAAGC
CTTTCATATTTGTGCCACATATTTCACAACTATTGGATACCAGTTCACCAACATTTGAACTTGAAGATCT
AGTTAAAAAGAAATCACATTTTAAGCCTGACAGAAGACACCCACTCTACCAAAAACATCAACAGGCATTG
GAAGTAGTAAATAATAATGAGGAAAAAGCCAAAATAATGTTGGACAACATGAGGAAACTGGAGAAAGAAC
TATTCAGAGAGATGGAATCAATCCTTCAAAACAAGCATCTTGATGTGGAGAAAATTGTTAATCTCTTTCC
TCAGTGTACAAAAGATGAAATTCAAATTTATCAGTCAAATTTATCAGTCAAAGTTAGTTCTTAG

Translation (417 aa):
MPPLATPPSVHLSLRVAGRPDRLYDEVQEVVYFPAVVHDNLGERLKCTYIEIDQVPETYAVVLSRPAWLW
GAEMGANEHGVCIGNEAVWGREEVCDEEALLGMDLVRLGLERADTAEKALNVIVDLLEKYGQGGNCTEGR
MVFSYHNSFLIADRNEAWILETAGKYWAAEKVQEGVRNISNQLSITTKIAREHPDMRNYAKRKGWWDGKK
EFDFAAAYSYLDTAKMMTSSGRYCEGYKLLNKHKGNITFETMMEILRDKPSGINMEGEFLTTASMVSILP
QDSSLPCIHFFTGTPDPERSVFKPFIFVPHISQLLDTSSPTFELEDLVKKKSHFKPDRRHPLYQKHQQAL
EVVNNNEEKAKIMLDNMRKLEKELFREMESILQNKHLDVEKIVNLFPQCTKDEIQIYQSNLSVKVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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