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Report for CCDS2258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2258.1 Public Homo sapiens 2 SCRN3 24 110 108 CCDS HistoryNCBI Gene:79634Re-query CCDS DB by CCDS ID:2258.1Re-query CCDS DB by GeneID:79634See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272732.11 ENSP00000272732.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272732.11Link to Ensembl Protein Viewer:ENSP00000272732.6Re-query CCDS DB by Nucleotide ID:ENST00000272732Re-query CCDS DB by Protein ID:ENSP00000272732
Original member Current member NCBI NM_024583.5 NP_078859.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024583.5Link to Protein Sequence:NP_078859.2Re-query CCDS DB by Nucleotide ID:NM_024583Re-query CCDS DB by Protein ID:NP_078859Link to BLAST:NP_078859.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078859.2 424 Q0VDG4-1 424 100% 0 0

Chromosomal Locations for CCDS 2258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 174398284 174398442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174399922 174400103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174400990 174401189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174404103 174404315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174422885 174423047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174424475 174424649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174427713 174427895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGAACCTTTTTCCTGTGACACTTTCGTGGCATTACCTCCAGCAACAGTCGATAACAGGATTATTTTTG
GAAAAAATTCAGATAGACTCTATGATGAAGTACAAGAGGTGGTTTATTTTCCTGCTGTAGTTCATGATAA
CCTGGGAGAACGTCTTAAGTGTACATATATAGAAATTGATCAAGTTCCTGAAACATATGCTGTTGTCCTG
AGTCGCCCAGCGTGGTTGTGGGGGGCAGAAATGGGAGCCAATGAGCATGGAGTTTGCATTGGGAATGAAG
CTGTATGGGGAAGAGAAGAAGTTTGTGATGAAGAAGCACTATTAGGAATGGACCTTGTCAGACTTGGCCT
TGAAAGAGCTGATACAGCTGAAAAAGCCCTCAATGTCATTGTTGACTTACTAGAAAAATATGGCCAGGGT
GGAAATTGCACAGAGGGTAGAATGGTATTTAGCTATCACAACAGTTTCCTGATAGCTGATAGGAATGAAG
CCTGGATTCTGGAGACTGCAGGGAAGTACTGGGCAGCAGAAAAAGTACAAGAGGGAGTTCGTAATATTTC
TAATCAACTTTCCATAACAACCAAGATTGCCCGGGAACACCCAGACATGAGAAACTATGCTAAGCGGAAA
GGTTGGTGGGATGGTAAAAAGGAGTTTGATTTTGCTGCAGCATATTCCTATCTTGACACAGCCAAGATGA
TGACTTCATCAGGCAGATACTGTGAGGGCTACAAGCTTCTAAATAAGCACAAAGGAAATATAACTTTTGA
AACAATGATGGAAATTCTTCGAGATAAACCAAGTGGCATTAATATGGAGGGAGAATTCCTGACCACTGCA
AGCATGGTTTCTATTTTACCTCAAGACTCCAGCCTTCCTTGCATTCACTTCTTTACAGGGACTCCTGATC
CTGAGAGATCTGTTTTTAAGCCTTTCATATTTGTGCCACATATTTCACAACTATTGGATACCAGTTCACC
AACATTTGAACTTGAAGATCTAGTTAAAAAGAAATCACATTTTAAGCCTGACAGAAGACACCCACTCTAC
CAAAAACATCAACAGGCATTGGAAGTAGTAAATAATAATGAGGAAAAAGCCAAAATAATGTTGGACAACA
TGAGGAAACTGGAGAAAGAACTATTCAGAGAGATGGAATCAATCCTTCAAAACAAGCATCTTGATGTGGA
GAAAATTGTTAATCTCTTTCCTCAGTGTACAAAAGATGAAATTCAAATTTATCAGTCAAATTTATCAGTC
AAAGTTAGTTCTTAG

Translation (424 aa):
MEPFSCDTFVALPPATVDNRIIFGKNSDRLYDEVQEVVYFPAVVHDNLGERLKCTYIEIDQVPETYAVVL
SRPAWLWGAEMGANEHGVCIGNEAVWGREEVCDEEALLGMDLVRLGLERADTAEKALNVIVDLLEKYGQG
GNCTEGRMVFSYHNSFLIADRNEAWILETAGKYWAAEKVQEGVRNISNQLSITTKIAREHPDMRNYAKRK
GWWDGKKEFDFAAAYSYLDTAKMMTSSGRYCEGYKLLNKHKGNITFETMMEILRDKPSGINMEGEFLTTA
SMVSILPQDSSLPCIHFFTGTPDPERSVFKPFIFVPHISQLLDTSSPTFELEDLVKKKSHFKPDRRHPLY
QKHQQALEVVNNNEEKAKIMLDNMRKLEKELFREMESILQNKHLDVEKIVNLFPQCTKDEIQIYQSNLSV
KVSS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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