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Report for CCDS82590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82590.1 Public Homo sapiens 20 SNPH 24 110 108 CCDS HistoryNCBI Gene:9751Re-query CCDS DB by CCDS ID:82590.1Re-query CCDS DB by GeneID:9751See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82590.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381867.6 ENSP00000371291.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381867.6Link to Ensembl Protein Viewer:ENSP00000371291.1Re-query CCDS DB by Nucleotide ID:ENST00000381867Re-query CCDS DB by Protein ID:ENSP00000371291
Original member Current member EBI ENST00000614659.1 ENSP00000479696.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614659.1Link to Ensembl Protein Viewer:ENSP00000479696.1Re-query CCDS DB by Nucleotide ID:ENST00000614659Re-query CCDS DB by Protein ID:ENSP00000479696
Original member Current member NCBI NM_001318234.2 NP_001305163.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318234.2Link to Protein Sequence:NP_001305163.1Re-query CCDS DB by Nucleotide ID:NM_001318234Re-query CCDS DB by Protein ID:NP_001305163Link to BLAST:NP_001305163.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305163.1 538 O15079-2 538 100% 0 0

Chromosomal Locations for CCDS 82590.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1296240 1296421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1297145 1297252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1300562 1300711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1304878 1306054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGCCGGGCAGCGGCCCCAGCGAGAGGATGACGTGGCCTGGCCCGGCCCTTTCTGCGGGCCCCCCAACCC
GCCCTCTCTCCTCAGCCCCCGGGATACCGCCCATCCCACCCCTTACTCGGACCCACAGCCTCATGGCCAT
GTCCCTGCCAGGAAGTAGACGGACCTCTGCTGGATCACGCAGGCGCACCTCTCCACCTGTGAGCGTGCGG
GATGCCTACGGCACCTCTTCGCTCAGCAGCAGCAGCAATTCTGGCTCCTACAAGGGCAGTGACAGCAGTC
CCACGCCAAGGCGCTCCATGAAATACACGCTGTGCAGTGACAACCATGGCATCAAGCCCCCGACCCCGGA
GCAGTACCTGACCCCCCTGCAGCAGAAGGAGGTGTGCATCCGGCACCTGAAAGCCCGGCTGAAGGACACA
CAGGACCGGCTCCAGGACCGGGACACAGAGATTGATGACCTGAAGACGCAGCTGTCACGCATGCAGGAGG
ACTGGATTGAGGAGGAGTGCCACCGCGTGGAGGCCCAGCTGGCCCTGAAGGAGGCCCGAAAGGAGATCAA
GCAGCTCAAGCAGGTCATCGACACTGTCAAGAACAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTAC
TTCGTGGACATCAACATCCAGAACAAGAAGCTGGAGACGCTGCTGCACAGCATGGAGGTGGCCCAGAATG
GCATGGCCAAGGAGGATGGCACTGGGGAGTCAGCCGGTGGGTCCCCTGCCCGCTCCCTCACCCGCAGCTC
CACCTACACCAAGCTGAGTGACCCGGCTGTCTGTGGTGACCGCCAGCCGGGTGATCCCTCCAGCGGCTCT
GCTGAGGATGGGGCAGACAGTGGCTTTGCAGCAGCCGATGACACACTGAGCCGGACGGACGCGCTGGAAG
CCAGCAGCCTGCTGTCGTCGGGGGTGGACTGTGGCACCGAGGAGACCTCGCTGCACAGCTCCTTCGGCCT
GGGCCCCCGCTTCCCTGCCAGCAACACCTATGAGAAGCTGCTGTGTGGCATGGAGGCTGGTGTGCAGGCC
AGCTGCATGCAGGAGCGTGCCATCCAGACAGACTTCGTGCAGTACCAGCCTGACCTTGACACCATCCTGG
AGAAAGTGACCCAGGCCCAGGTCTGTGGGACAGACCCTGAGTCAGGGGACAGGTGCCCAGAGCTGGATGC
CCACCCTTCAGGGCCCAGAGACCCCAACTCAGCAGTGGTGGTGACAGTGGGTGATGAGCTAGAGGCCCCA
GAGCCCATCACCCGTGGACCCACCCCACAGCGGCCTGGTGCCAACCCCAACCCTGGCCAGTCGGTGAGCG
TGGTGTGCCCCATGGAAGAGGAGGAGGAGGCTGCCGTGGCTGAGAAGGAGCCCAAGAGCTACTGGAGCCG
CCACTACATCGTGGATCTGCTGGCTGTGGTGGTGCCGGCCGTGCCCACGGTGGCCTGGCTTTGCCGCTCC
CAGCGGCGCCAGGGCCAGCCCATCTACAACATCAGCTCCCTGCTGCGGGGCTGCTGCACTGTGGCCTTGC
ACTCCATCCGCAGGATCAGCTGCCGCTCGCTGAGCCAGCCGAGTCCCAGCCCAGCGGGCGGCGGCTCCCA
GCTCTGA

Translation (538 aa):
MPGSGPSERMTWPGPALSAGPPTRPLSSAPGIPPIPPLTRTHSLMAMSLPGSRRTSAGSRRRTSPPVSVR
DAYGTSSLSSSSNSGSYKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDT
QDRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIKQLKQVIDTVKNNLIDKDKGLQKY
FVDINIQNKKLETLLHSMEVAQNGMAKEDGTGESAGGSPARSLTRSSTYTKLSDPAVCGDRQPGDPSSGS
AEDGADSGFAAADDTLSRTDALEASSLLSSGVDCGTEETSLHSSFGLGPRFPASNTYEKLLCGMEAGVQA
SCMQERAIQTDFVQYQPDLDTILEKVTQAQVCGTDPESGDRCPELDAHPSGPRDPNSAVVVTVGDELEAP
EPITRGPTPQRPGANPNPGQSVSVVCPMEEEEEAAVAEKEPKSYWSRHYIVDLLAVVVPAVPTVAWLCRS
QRRQGQPIYNISSLLRGCCTVALHSIRRISCRSLSQPSPSPAGGGSQL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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