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Report for CCDS13025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13025.1 Public Homo sapiens 20 TGM6 24 110 108 CCDS HistoryNCBI Gene:343641Re-query CCDS DB by CCDS ID:13025.1Re-query CCDS DB by GeneID:343641See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13025.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000202625.7 ENSP00000202625.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000202625.7Link to Ensembl Protein Viewer:ENSP00000202625.2Re-query CCDS DB by Nucleotide ID:ENST00000202625Re-query CCDS DB by Protein ID:ENSP00000202625
Original member Current member NCBI NM_198994.3 NP_945345.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198994.3Link to Protein Sequence:NP_945345.2Re-query CCDS DB by Nucleotide ID:NM_198994Re-query CCDS DB by Protein ID:NP_945345Link to BLAST:NP_945345.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945345.2 706 O95932-1 706 100% 0 0

Chromosomal Locations for CCDS 13025.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2380969 2380975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2394452 2394625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2395194 2395436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2396506 2396624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2397918 2398046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2399561 2399738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2400306 2400444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2403397 2403500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2403581 2403823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2417232 2417573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2430446 2430600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2430894 2431027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2432490 2432643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGCAGGGATCAGAGTCACCAAGGTGGACTGGCAGCGGTCGAGGAATGGCGCTGCCCACCACACCCAGG
AGTACCCCTGCCCTGAGCTGGTGGTTCGCAGGGGCCAGTCGTTCAGCCTCACGCTGGAGCTGAGCAGAGC
CCTGGACTGTGAGGAGATCCTCATCTTCACGATGGAGACAGGACCCCGGGCTTCTGAGGCCCTCCACACC
AAAGCTGTGTTCCAGACATCGGAGCTGGAGCGGGGTGAGGGCTGGACAGCAGCAAGGGAGGCTCAGATGG
AGAAAACTCTGACCGTCAGTCTCGCCAGCCCTCCCAGTGCTGTCATTGGCCGCTACCTGCTGAGCATCAG
GCTTTCCTCTCACCGCAAACACAGCAACCGGAGGCTGGGCGAGTTTGTTCTCCTTTTCAACCCATGGTGT
GCAGAGGACGATGTGTTTCTGGCCTCAGAGGAGGAGAGACAGGAGTACGTGCTCAGCGACAGCGGCATCA
TCTTCCGAGGCGTGGAGAAGCACATACGAGCCCAGGGCTGGAACTACGGGCAGTTTGAGGAGGACATCCT
GAACATCTGCCTCTCCATCCTGGATCGAAGCCCCGGTCACCAAAACAACCCAGCCACCGACGTGTCCTGC
CGCCACAACCCCATCTACGTCACCAGGGTCATCAGTGCCATGGTGAACAGCAACAACGACCGAGGTGTGG
TGCAAGGACAGTGGCAGGGCAAGTACGGCGGCGGCACCAGCCCGCTGCACTGGCGCGGCAGCGTGGCCAT
TCTGCAGAAGTGGCTCAAGGGCAGGTACAAGCCAGTCAAGTACGGCCAGTGCTGGGTCTTCGCCGGAGTC
CTGTGCACAGTCCTCAGGTGCTTGGGGATAGCCACACGGGTCGTGTCCAACTTCAACTCAGCCCACGACA
CAGACCAGAACCTGAGTGTGGACAAATACGTGGACTCCTTCGGGCGGACCCTGGAGGACCTGACAGAAGA
CAGCATGTGGAATTTCCATGTCTGGAATGAGAGCTGGTTTGCCCGGCAGGACCTAGGCCCCTCTTACAAT
GGCTGGCAGGTTCTGGATGCCACCCCCCAGGAGGAGAGTGAAGGTGTGTTCCGGTGCGGCCCAGCCTCAG
TCACCGCCATCCGCGAGGGTGATGTGCACCTGGCTCACGATGGCCCCTTCGTGTTTGCGGAGGTCAACGC
CGACTACATCACCTGGCTGTGGCACGAGGATGAGAGCCGGGAGCGTGTATACTCAAACACGAAGAAGATT
GGGAGATGCATCAGCACCAAGGCGGTGGGCAGTGACTCCCGCGTGGACATCACTGACCTCTACAAGTATC
CGGAAGGGTCCCGGAAAGAGAGGCAGGTGTACAGCAAGGCGGTGAACAGGCTGTTCGGCGTGGAAGCCTC
TGGAAGGAGAATCTGGATCCGCAGGGCTGGGGGTCGCTGTCTCTGGCGTGACGACCTCCTGGAGCCTGCC
ACCAAGCCCAGCATCGCTGGCAAGTTCAAGGTGCTAGAGCCTCCCATGCTGGGCCACGACCTGAGACTGG
CCCTGTGCTTGGCCAACCTCACCTCCCGGGCCCAGCGGGTGAGGGTCAACCTGAGCGGTGCCACCATCCT
CTATACCCGCAAGCCAGTGGCAGAGATCCTGCATGAATCCCACGCCGTGAGGCTGGGGCCGCAAGAAGAG
AAGAGAATCCCAATTACAATATCTTACTCTAAGTATAAAGAAGACCTGACAGAGGACAAGAAGATCCTGT
TGGCTGCCATGTGCCTTGTCACCAAAGGAGAGAAGCTTCTGGTGGAGAAGGACATTACTCTAGAGGACTT
CATCACCATCAAGGTTCTGGGCCCAGCCATGGTGGGAGTGGCAGTTACAGTGGAAGTGACAGTAGTCAAC
CCCCTCATAGAGAGAGTGAAGGACTGTGCGCTGATGGTGGAGGGCAGCGGCCTTCTCCAGGAACAGCTCA
GCATCGACGTGCCTACCCTGGAGCCTCAGGAGAGGGCCTCAGTCCAGTTTGACATCACCCCCTCCAAAAG
TGGCCCAAGGCAGCTGCAGGTGGACCTTGTAAGCCCTCACTTCCCGGACATCAAGGGCTTTGTGATCGTC
CATGTGGCCACTGCCAAGTGA

Translation (706 aa):
MAGIRVTKVDWQRSRNGAAHHTQEYPCPELVVRRGQSFSLTLELSRALDCEEILIFTMETGPRASEALHT
KAVFQTSELERGEGWTAAREAQMEKTLTVSLASPPSAVIGRYLLSIRLSSHRKHSNRRLGEFVLLFNPWC
AEDDVFLASEEERQEYVLSDSGIIFRGVEKHIRAQGWNYGQFEEDILNICLSILDRSPGHQNNPATDVSC
RHNPIYVTRVISAMVNSNNDRGVVQGQWQGKYGGGTSPLHWRGSVAILQKWLKGRYKPVKYGQCWVFAGV
LCTVLRCLGIATRVVSNFNSAHDTDQNLSVDKYVDSFGRTLEDLTEDSMWNFHVWNESWFARQDLGPSYN
GWQVLDATPQEESEGVFRCGPASVTAIREGDVHLAHDGPFVFAEVNADYITWLWHEDESRERVYSNTKKI
GRCISTKAVGSDSRVDITDLYKYPEGSRKERQVYSKAVNRLFGVEASGRRIWIRRAGGRCLWRDDLLEPA
TKPSIAGKFKVLEPPMLGHDLRLALCLANLTSRAQRVRVNLSGATILYTRKPVAEILHESHAVRLGPQEE
KRIPITISYSKYKEDLTEDKKILLAAMCLVTKGEKLLVEKDITLEDFITIKVLGPAMVGVAVTVEVTVVN
PLIERVKDCALMVEGSGLLQEQLSIDVPTLEPQERASVQFDITPSKSGPRQLQVDLVSPHFPDIKGFVIV
HVATAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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