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Report for CCDS13162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13162.1 Public Homo sapiens 20 CST5 24 110 108 CCDS HistoryNCBI Gene:1473Re-query CCDS DB by CCDS ID:13162.1Re-query CCDS DB by GeneID:1473See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13162.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304710.5 ENSP00000307132.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304710.5Link to Ensembl Protein Viewer:ENSP00000307132.4Re-query CCDS DB by Nucleotide ID:ENST00000304710Re-query CCDS DB by Protein ID:ENSP00000307132
Original member Current member NCBI NM_001900.5 NP_001891.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001900.5Link to Protein Sequence:NP_001891.2Re-query CCDS DB by Nucleotide ID:NM_001900Re-query CCDS DB by Protein ID:NP_001891Link to BLAST:NP_001891.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001891.2 142 P28325 142 100% 0 0

Chromosomal Locations for CCDS 13162.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23876188 23876271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23877505 23877618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23879446 23879676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGATGTGGCCCATGCACACCCCACTGCTGCTGCTGACTGCCTTGATGGTGGCCGTGGCCGGGAGTGCCT
CGGCCCAATCTAGGACCTTGGCAGGTGGCATCCATGCCACAGACCTCAATGACAAGAGTGTGCAGTGTGC
CCTGGACTTTGCCATCAGCGAGTACAACAAGGTCATTAATAAGGATGAGTACTACAGCCGCCCTCTGCAG
GTGATGGCTGCCTACCAGCAGATCGTGGGTGGGGTGAACTACTACTTCAATGTGAAGTTCGGTCGAACCA
CATGCACCAAGTCCCAGCCCAACTTGGACAACTGTCCCTTCAATGACCAGCCAAAACTGAAAGAGGAAGA
GTTCTGCTCTTTCCAGATCAATGAAGTTCCCTGGGAGGATAAAATTTCCATTCTGAACTACAAGTGCCGG
AAAGTCTAG

Translation (142 aa):
MMWPMHTPLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQCALDFAISEYNKVINKDEYYSRPLQ
VMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCSFQINEVPWEDKISILNYKCR
KV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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