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Report for CCDS13929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13929.1 Public Homo sapiens 22 FOXRED2 24 110 108 CCDS HistoryNCBI Gene:80020Re-query CCDS DB by CCDS ID:13929.1Re-query CCDS DB by GeneID:80020See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13929.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216187.10 ENSP00000216187.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000216187.10Link to Ensembl Protein Viewer:ENSP00000216187.6Re-query CCDS DB by Nucleotide ID:ENST00000216187Re-query CCDS DB by Protein ID:ENSP00000216187
Original member Current member EBI ENST00000397223.4 ENSP00000380400.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397223.4Link to Ensembl Protein Viewer:ENSP00000380400.4Re-query CCDS DB by Nucleotide ID:ENST00000397223Re-query CCDS DB by Protein ID:ENSP00000380400
Original member Current member EBI ENST00000397224.9 ENSP00000380401.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397224.9Link to Ensembl Protein Viewer:ENSP00000380401.4Re-query CCDS DB by Nucleotide ID:ENST00000397224Re-query CCDS DB by Protein ID:ENSP00000380401
Original member Current member EBI ENST00000684868.1 ENSP00000510800.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684868.1Link to Ensembl Protein Viewer:ENSP00000510800.1Re-query CCDS DB by Nucleotide ID:ENST00000684868Re-query CCDS DB by Protein ID:ENSP00000510800
Original member Current member NCBI NM_001102371.2 NP_001095841.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102371.2Link to Protein Sequence:NP_001095841.1Re-query CCDS DB by Nucleotide ID:NM_001102371Re-query CCDS DB by Protein ID:NP_001095841Link to BLAST:NP_001095841.1
Original member Current member NCBI NM_024955.6 NP_079231.4 Accepted alive Link to Nucleotide Sequence:NM_024955.6Link to Protein Sequence:NP_079231.4Re-query CCDS DB by Nucleotide ID:NM_024955Re-query CCDS DB by Protein ID:NP_079231Link to BLAST:NP_079231.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095841.1 684 Q8IWF2-1 684 100% 0 0
NP_079231.4 684 Q8IWF2-1 684 100% 0 0

Chromosomal Locations for CCDS 13929.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 36490008 36490267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36493633 36493803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36495967 36496208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36497991 36498156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36501241 36501407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36504098 36504367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36504515 36504766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36505896 36506422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGGGCCTCTCCGCTGCGGCCCCGTTGTGGGGTCCCCCGGGGCTGCTCCTGGCCATCGCCCTGCACCCAG
CGCTGTCGGTGCCCCCGCGCCGGGACTACTGCGTGCTGGGCGCTGGGCCCGCGGGCCTGCAGATGGCCTA
CTTCCTGCAGCGCGCTGGACGCGACTACGCAGTGTTCGAGCGGGCCCCGCGGCCCGGCAGCTTCTTCACA
CGCTACCCGCGGCACCGCAAGCTCATCAGCATCAACAAGCGGTACACGGGCAAGGCTAACGCCGAGTTCA
ACCTCCGCCACGACTGGAACTCTCTGCTCAGCCACGACCCCCGGCTGCTCTTCAGACACTACTCGCGTGC
CTACTTCCCCGACGCCCGCGACATGGTGCGCTACCTGGGTGACTTCGCGGACACGCTGGGGCTCCGTGTC
CAGTACAACACCACCATCGCCCACGTCACTCTGGACAAGGACCGACAGGCCTGGAATGGCCACTACTTCA
TCCTAACTGACCAGAAGGGCCAGGTGCATCAGTGCAGCGTCCTCTTTGTAGCCACTGGTTTATCAGTCCC
CAACCAGGTTGACTTCCCTGGCTCCGAATATGCAGAGGGTTACGAGTCCGTGTCCGTGGACCCTGAGGAC
TTTGTAGGCCAGAATGTGCTGATCCTGGGTCGTGGGAACTCGGCCTTTGAGACAGCAGAGAACATCTTGG
GTGTCACAAACTTTATCCATATGCTCAGCCGCTCCCGGGTCCGTCTGTCCTGGGCCACCCACTACGTTGG
AGACCTCAGAGCCATCAACAATGGCCTGCTGGATACCTACCAGCTCAAGTCCCTGGACGGGCTGCTCGAG
TCTGACCTGACGGATCTGGCCATCCTGAAGGACAGCAAAGGCAAGTTCCATGTCACCCCGAAATTCTTCC
TGGAAGAAGCCAACACCAACCAGAGTGCCGACTCCATCACCCTCCCCCAGGACGACAATGACAACTTTGC
CATGCGCGTGCCCTATGACCGGGTAATCCGCTGCCTGGGCTGGAACTTTGACTTCTCCATTTTCAATAAG
TCCCTCAGACTTAACTCGGGAAATGCATTCGGCAAGAAGTACCCGCTGATTCGAGCTAGCTACGAATCCA
AAGGAAGCCGGGGTCTGTTTATCCTGGGTACTGCCAGCCACTCGGTGGACTACCGGAAATCTGCTGGGGG
CTTCATCCACGGATTCCGATACACAGTGCGTGCTGTTCACCGGCTCCTGGAGCACCGCCACCACAGCGTC
ACCTGGCCCGCCACTGAGCTCCCCATCACACAGCTGACCAGCTCCATCGTGCGGCGCGTGAATGAGGCTT
CTGGGCTCTACCAGATGTTCGGTGTGCTGGCCGATGTCATCCTGTTGAAGGAGAATTCCACGGCCTTTGA
GTACCTGGAGGAGTTCCCCATACAGATGCTGGCCCAGCTGGAGACACTCACAGGGAGGAAGGCAAAGCAC
GGGCTCTTCGTCATCAACATGGAATATGGCAGAAATTTCTCTGGCCCCGACAAGGACGTCTTCTTTGATG
ACCGGTCTGTGGGGCACACAGAAGATGCCTGGCAGTCTAACTTTCTTCATCCTGTCATCTACTACTATAG
ATACCTCCCCACCGAACAGGAGGTGAGGTTCCGCCCTGCACACTGGCCCCTGCCTCGGCCCACGGCCATC
CATCACATCGTGGAAGACTTCTTAACAGACTGGACTGCCCCGATCGGGCACATCCTACCTCTGAGGCGCT
TCCTGGAGAACTGTTTGGACACCGATTTGCGAAGCTTCTATGCAGAGTCCTGCTTCCTGTTCGCCCTCAC
GCGCCAGAAGTTGCCACCCTTTTGCCAGCAGGGGTACCTGAGGATGCAGGGACTCGTGAGTACCGAGAGC
CTTTGGCAGCACAGAGTGGAGAGCAGGCTCCTGCGGGACTATGCCCCCACAGGCAGGCGCCTGGAGGACA
GCAGCCAGCAGCTTGGCGACCAAGAGCCACTAGGTTCCCCCCTGGCTCCAGGGCCTCTGGCTCAGTCCGT
CGATAGCAACAAAGAGGAGCTCTGA

Translation (684 aa):
MGLSAAAPLWGPPGLLLAIALHPALSVPPRRDYCVLGAGPAGLQMAYFLQRAGRDYAVFERAPRPGSFFT
RYPRHRKLISINKRYTGKANAEFNLRHDWNSLLSHDPRLLFRHYSRAYFPDARDMVRYLGDFADTLGLRV
QYNTTIAHVTLDKDRQAWNGHYFILTDQKGQVHQCSVLFVATGLSVPNQVDFPGSEYAEGYESVSVDPED
FVGQNVLILGRGNSAFETAENILGVTNFIHMLSRSRVRLSWATHYVGDLRAINNGLLDTYQLKSLDGLLE
SDLTDLAILKDSKGKFHVTPKFFLEEANTNQSADSITLPQDDNDNFAMRVPYDRVIRCLGWNFDFSIFNK
SLRLNSGNAFGKKYPLIRASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEHRHHSV
TWPATELPITQLTSSIVRRVNEASGLYQMFGVLADVILLKENSTAFEYLEEFPIQMLAQLETLTGRKAKH
GLFVINMEYGRNFSGPDKDVFFDDRSVGHTEDAWQSNFLHPVIYYYRYLPTEQEVRFRPAHWPLPRPTAI
HHIVEDFLTDWTAPIGHILPLRRFLENCLDTDLRSFYAESCFLFALTRQKLPPFCQQGYLRMQGLVSTES
LWQHRVESRLLRDYAPTGRRLEDSSQQLGDQEPLGSPLAPGPLAQSVDSNKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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