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Report for CCDS33716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33716.1 Public Homo sapiens 3 SGO1 24 110 108 CCDS HistoryNCBI Gene:151648Re-query CCDS DB by CCDS ID:33716.1Re-query CCDS DB by GeneID:151648See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33716.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263753.8 ENSP00000263753.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000263753.8Link to Ensembl Protein Viewer:ENSP00000263753.4Re-query CCDS DB by Nucleotide ID:ENST00000263753Re-query CCDS DB by Protein ID:ENSP00000263753
Original member Current member EBI ENST00000421451.5 ENSP00000414129.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421451.5Link to Ensembl Protein Viewer:ENSP00000414129.1Re-query CCDS DB by Nucleotide ID:ENST00000421451Re-query CCDS DB by Protein ID:ENSP00000414129
Original member Current member NCBI NM_001012410.5 NP_001012410.1 Accepted alive Link to Nucleotide Sequence:NM_001012410.5Link to Protein Sequence:NP_001012410.1Re-query CCDS DB by Nucleotide ID:NM_001012410Re-query CCDS DB by Protein ID:NP_001012410Link to BLAST:NP_001012410.1
Original member Current member NCBI NM_001199252.3 NP_001186181.1 Accepted alive Link to Nucleotide Sequence:NM_001199252.3Link to Protein Sequence:NP_001186181.1Re-query CCDS DB by Nucleotide ID:NM_001199252Re-query CCDS DB by Protein ID:NP_001186181Link to BLAST:NP_001186181.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012410.1 561 Q5FBB7-1 561 100% 0 0
NP_001186181.1 561 Q5FBB7-1 561 100% 0 0

Chromosomal Locations for CCDS 33716.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 20161105 20161226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20170724 20170815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20171043 20171232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20174249 20175055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20176601 20176659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20178271 20178347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20183608 20183804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20183886 20184027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGCCAAGGAAAGATGCCTGAAAAAGTCCTTTCAAGATAGTCTTGAAGACATAAAGAAGCGAATGAAAG
AGAAAAGGAATAAAAACTTGGCAGAGATTGGCAAACGCAGGTCTTTTATAGCTGCACCATGCCAAATAAT
CACCAACACTTCTACACTGCTGAAAAATTACCAAGACAACAACAAAATGTTAGTTTTAGCTTTGGAAAAT
GAAAAATCCAAAGTGAAAGAAGCCCAAGATATCATCCTACAGCTGAGAAAAGAATGTTACTATCTCACAT
GTCAGCTATATGCATTGAAAGGAAAACTTACATCACAACAAACAGTAGAACCTGCTCAGAACCAGGAAAT
ATGTTCCTCTGGAATGGACCCCAATAGTGATGACAGCTCCAGAAATTTATTTGTGAAGGATTTACCGCAA
ATTCCTCTTGAAGAAACTGAACTTCCAGGACAAGGAGAATCATTTCAAATAGAAGATCAGATACCTACTA
TTCCTCAAGACACACTGGGAGTTGATTTTGATTCAGGTGAAGCTAAGTCTACTGATAATGTCTTACCTAG
AACTGTATCTGTTCGTAGCAGTTTAAAGAAACATTGTAACAGTATATGTCAGTTTGATAGCTTGGATGAT
TTTGAAACCAGTCATTTGGCAGGGAAGTCTTTTGAATTCGAAAGAGTTGGATTTTTAGACCCACTAGTAA
ACATGCACATACCTGAAAATGTACAACACAATGCTTGTCAATGGAGCAAGGACCAAGTTAACTTATCACC
AAAGCTGATTCAGCCAGGAACGTTTACTAAAACAAAAGAAGACATTTTAGAATCTAAATCTGAACAAACT
AAAAGTAAGCAAAGAGATACACAAGAAAGAAAAAGAGAAGAGAAAAGAAAAGCTAACAGGAGAAAATCAA
AACGTATGTCAAAATATAAAGAGAATAAAAGCGAAAATAAAAAAACTGTTCCCCAAAAAAAAATGCACAA
ATCTGTCAGTTCCAATGATGCTTACAATTTTAATTTGGAAGAGGGTGTTCATCTTACTCCTTTCCGACAA
AAAGTGAGCAATGACTCTAATAGAGAAGAAAACAACGAGTCTGAAGTGAGCCTCTGTGAATCAAGTGGTT
CAGGAGATGATTCCGATGACCTCTATTTGCCCACTTGCAAGTACATTCAGAATCCCACGAGCAATTCAGA
TAGACCAGTCACCAGGCCTCTAGCTAAAAGAGCACTGAAATACACAGATGAAAAAGAGACGGAGGGTTCT
AAGCCAACAAAAACTCCTACCACTACACCACCTGAAACTCAGCAGTCACCTCATCTTAGCCTGAAGGATA
TCACCAATGTCTCCTTGTATCCTGTTGTGAAAATCAGAAGACTTTCTCTTTCTCCAAAAAAGAATAAAGC
AAGCCCAGCAGTGGCTCTGCCTAAACGTAGGTGCACAGCCAGCGTGAACTATAAGGAGCCCACCCTCGCT
TCGAAACTGAGAAGAGGGGACCCTTTTACAGATTTGTGTTTTTTGAATTCTCCTATTTTCAAGCAGAAAA
AGGATTTGAGACGTTCTAAAAAAAGAGCCCTGGAGGTATCACCTGCCAAAGAAGCAATTTTTATTTTATA
TTATGTTCGAGAATTTGTTTCGAGATTCCCAGACTGTAGGAAATGTAAACTTGAAACCCACATCTGCTTG
AGGTAA

Translation (561 aa):
MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDNNKMLVLALEN
EKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQ
IPLEETELPGQGESFQIEDQIPTIPQDTLGVDFDSGEAKSTDNVLPRTVSVRSSLKKHCNSICQFDSLDD
FETSHLAGKSFEFERVGFLDPLVNMHIPENVQHNACQWSKDQVNLSPKLIQPGTFTKTKEDILESKSEQT
KSKQRDTQERKREEKRKANRRKSKRMSKYKENKSENKKTVPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQ
KVSNDSNREENNESEVSLCESSGSGDDSDDLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGS
KPTKTPTTTPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLA
SKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVREFVSRFPDCRKCKLETHICL
R


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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