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Report for CCDS2730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2730.1 Public Homo sapiens 3 SLC6A20 24 110 108 CCDS HistoryNCBI Gene:54716Re-query CCDS DB by CCDS ID:2730.1Re-query CCDS DB by GeneID:54716See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2730.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353278.8 ENSP00000296133.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000353278.8Link to Ensembl Protein Viewer:ENSP00000296133.5Re-query CCDS DB by Nucleotide ID:ENST00000353278Re-query CCDS DB by Protein ID:ENSP00000296133
Original member Current member NCBI NM_022405.4 NP_071800.1 Accepted alive Link to Nucleotide Sequence:NM_022405.4Link to Protein Sequence:NP_071800.1Re-query CCDS DB by Nucleotide ID:NM_022405Re-query CCDS DB by Protein ID:NP_071800Link to BLAST:NP_071800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071800.1 555 Q9NP91-2 555 100% 0 0

Chromosomal Locations for CCDS 2730.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45758978 45759127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45759857 45760022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45762913 45763072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45765537 45765741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45770209 45770371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45771217 45771458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45775761 45775988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45780009 45780100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45782083 45782223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45796299 45796419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGAGAAAGCGCGGCCGCTGTGGGCCAACTCGCTACAGTTCGTGTTCGCCTGCATCTCGTACGCCGTGG
GCCTGGGCAACGTGTGGCGATTCCCGTACCTGTGCCAGATGTACGGCGGAGGTAGTTTCCTGGTCCCCTA
CATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGG
CAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCGGGGTCGCCAGCGTGGTGG
TCTCTTTCTTCCTCTCCATGTACTACAACGTCATCAACGCCTGGGCCTTCTGGTACCTCTTCCACTCCTT
CCAGGATCCCCTGCCGTGGTCTGTCTGCCCACTGAATGGTAACCACACGGGCTACGATGAGGAGTGTGAG
AAGGCGTCCTCCACACAGTACTTCTGGTACAGGAAAACCCTCAATATCTCGCCGTCCCTCCAGGAGAACG
GGGGTGTGCAGTGGGAGCCGGCGCTGTGCCTCCTCCTGGCCTGGCTGGTGGTGTACCTGTGCATCCTGCG
TGGCACCGAGTCCACTGGCAAGATAGAGCAGCTGGCCAACCCCAAGGCCTGGATCAATGCAGCCACCCAG
ATCTTCTTCTCACTTGGCCTGGGCTTCGGCAGCCTGATCGCCTTCGCCAGCTACAATGAGCCATCCAACA
ACTGCCAGAAGCACGCCATCATCGTGTCCCTCATCAACAGCTTCACCTCCATATTTGCCAGCATTGTCAC
CTTCTCCATCTATGGCTTCAAGGCCACCTTCAATTATGAAAACTGCTTGAAGAAGGTGAGTCTGCTGCTG
ACCAACACTTTTGACCTTGAAGATGGCTTTTTGACAGCCAGCAACCTGGAGCAGGTGAAGGGCTACCTCG
CATCTGCCTACCCAAGCAAATACAGCGAGATGTTCCCGCAAATCAAAAACTGCAGCTTGGAATCGGAGCT
AGACACGGCCGTCCAGGGCACTGGCCTGGCATTCATCGTCTACACAGAGGCCATTAAAAACATGGAGGTG
TCCCAGCTGTGGTCGGTGCTCTACTTCTTCATGCTGCTGATGCTGGGCATTGGGAGCATGCTGGGGAACA
CAGCGGCCATCCTCACCCCTCTGACAGACAGCAAGATCATCTCCAGCCACCTGCCCAAGGAGGCCATCTC
AGGTCTGGTGTGCCTTGTCAACTGTGCCATTGGCATGGTGTTCACGATGGAGGCTGGGAACTACTGGTTT
GACATATTCAACGACTACGCGGCCACACTGTCCCTGCTGCTCATCGTGCTGGTGGAGACGATTGCCGTGT
GCTACGTGTACGGGCTGAGGAGATTTGAAAGTGACCTTAAGGCCATGACCGGCCGAGCTGTGAGCTGGTA
CTGGAAGGTGATGTGGGCTGGCGTAAGCCCACTGCTGATTGTCAGCCTCTTTGTCTTCTACCTGAGCGAC
TACATCCTCACGGGGACCCTGAAGTATCAAGCCTGGGACGCCTCCCAGGGCCAGCTCGTGACCAAAGATT
ACCCGGCCTATGCACTGGCTGTCATCGGGCTGCTTGTGGCCTCCTCCACCATGTGCATCCCCCTGGCGGC
CCTGGGGACTTTTGTTCAGCGTCGCCTCAAGAGGGGAGACGCAGACCCCGTGGCCTGA

Translation (555 aa):
MEKARPLWANSLQFVFACISYAVGLGNVWRFPYLCQMYGGGSFLVPYIIMLIVEGMPLLYLELAVGQRMR
QGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWSVCPLNGNHTGYDEECE
KASSTQYFWYRKTLNISPSLQENGGVQWEPALCLLLAWLVVYLCILRGTESTGKIEQLANPKAWINAATQ
IFFSLGLGFGSLIAFASYNEPSNNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNYENCLKKVSLLL
TNTFDLEDGFLTASNLEQVKGYLASAYPSKYSEMFPQIKNCSLESELDTAVQGTGLAFIVYTEAIKNMEV
SQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTDSKIISSHLPKEAISGLVCLVNCAIGMVFTMEAGNYWF
DIFNDYAATLSLLLIVLVETIAVCYVYGLRRFESDLKAMTGRAVSWYWKVMWAGVSPLLIVSLFVFYLSD
YILTGTLKYQAWDASQGQLVTKDYPAYALAVIGLLVASSTMCIPLAALGTFVQRRLKRGDADPVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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