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Report for CCDS93258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93258.1 Public Homo sapiens 3 SLC6A20 24 110 108 CCDS HistoryNCBI Gene:54716Re-query CCDS DB by CCDS ID:93258.1Re-query CCDS DB by GeneID:54716See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000703343.1 ENSP00000515266.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703343.1Link to Ensembl Protein Viewer:ENSP00000515266.1Re-query CCDS DB by Nucleotide ID:ENST00000703343Re-query CCDS DB by Protein ID:ENSP00000515266
Original member Current member NCBI NM_001385683.1 NP_001372612.1 Accepted alive Link to Nucleotide Sequence:NM_001385683.1Link to Protein Sequence:NP_001372612.1Re-query CCDS DB by Nucleotide ID:NM_001385683Re-query CCDS DB by Protein ID:NP_001372612Link to BLAST:NP_001372612.1

Chromosomal Locations for CCDS 93258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45758978 45759127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45759857 45760022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45762913 45763072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45765537 45765741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45770209 45770371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45771217 45771491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45772505 45772615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45775761 45775988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45780009 45780100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45782083 45782223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45796299 45796419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGGAGAAAGCGCGGCCGCTGTGGGCCAACTCGCTACAGTTCGTGTTCGCCTGCATCTCGTACGCCGTGG
GCCTGGGCAACGTGTGGCGATTCCCGTACCTGTGCCAGATGTACGGCGGAGGTAGTTTCCTGGTCCCCTA
CATCATCATGCTTATCGTGGAGGGAATGCCGCTCTTGTACCTGGAACTGGCTGTGGGGCAGCGCATGCGG
CAGGGCAGCATCGGCGCCTGGAGGACCATCAGCCCGTACCTCAGTGGTGTCGGGGTCGCCAGCGTGGTGG
TCTCTTTCTTCCTCTCCATGTACTACAACGTCATCAACGCCTGGGCCTTCTGGTACCTCTTCCACTCCTT
CCAGGATCCCCTGCCGTGGTCTGTCTGCCCACTGAATGGTAACCACACGGGCTACGATGAGGAGTGTGAG
AAGGCGTCCTCCACACAGTACTTCTGGTACAGGAAAACCCTCAATATCTCGCCGTCCCTCCAGGAGAACG
GGGGTGTGCAGTGGGAGCCGGCGCTGTGCCTCCTCCTGGCCTGGCTGGTGGTGTACCTGTGCATCCTGCG
TGGCACCGAGTCCACTGGCAAGGTGGTGTATTTCACGGCGTCACTGCCCTATTGCGTGCTCATCATCTAC
CTCATCAGGGGCCTCACGCTCCACGGAGCCACCAATGGCCTCATGTACATGTTCACTCCCAAGGGATCAT
CAGCCCTGTCCCTGCTGGCCTTCCAGATAGAGCAGCTGGCCAACCCCAAGGCCTGGATCAATGCAGCCAC
CCAGATCTTCTTCTCACTTGGCCTGGGCTTCGGCAGCCTGATCGCCTTCGCCAGCTACAATGAGCCATCC
AACAACTGCCAGAAGCACGCCATCATCGTGTCCCTCATCAACAGCTTCACCTCCATATTTGCCAGCATTG
TCACCTTCTCCATCTATGGCTTCAAGGCCACCTTCAATTATGAAAACTGCTTGAAGAAGGTGAGTCTGCT
GCTGACCAACACTTTTGACCTTGAAGATGGCTTTTTGACAGCCAGCAACCTGGAGCAGGTGAAGGGCTAC
CTCGCATCTGCCTACCCAAGCAAATACAGCGAGATGTTCCCGCAAATCAAAAACTGCAGCTTGGAATCGG
AGCTAGACACGGCCGTCCAGGGCACTGGCCTGGCATTCATCGTCTACACAGAGGCCATTAAAAACATGGA
GGTGTCCCAGCTGTGGTCGGTGCTCTACTTCTTCATGCTGCTGATGCTGGGCATTGGGAGCATGCTGGGG
AACACAGCGGCCATCCTCACCCCTCTGACAGACAGCAAGATCATCTCCAGCCACCTGCCCAAGGAGGCCA
TCTCAGGTCTGGTGTGCCTTGTCAACTGTGCCATTGGCATGGTGTTCACGATGGAGGCTGGGAACTACTG
GTTTGACATATTCAACGACTACGCGGCCACACTGTCCCTGCTGCTCATCGTGCTGGTGGAGACGATTGCC
GTGTGCTACGTGTACGGGCTGAGGAGATTTGAAAGTGACCTTAAGGCCATGACCGGCCGAGCTGTGAGCT
GGTACTGGAAGGTGATGTGGGCTGGCGTAAGCCCACTGCTGATTGTCAGCCTCTTTGTCTTCTACCTGAG
CGACTACATCCTCACGGGGACCCTGAAGTATCAAGCCTGGGACGCCTCCCAGGGCCAGCTCGTGACCAAA
GATTACCCGGCCTATGCACTGGCTGTCATCGGGCTGCTTGTGGCCTCCTCCACCATGTGCATCCCCCTGG
CGGCCCTGGGGACTTTTGTTCAGCGTCGCCTCAAGAGGGGAGACGCAGACCCCGTGGCCTGA

Translation (603 aa):
MEKARPLWANSLQFVFACISYAVGLGNVWRFPYLCQMYGGGSFLVPYIIMLIVEGMPLLYLELAVGQRMR
QGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWSVCPLNGNHTGYDEECE
KASSTQYFWYRKTLNISPSLQENGGVQWEPALCLLLAWLVVYLCILRGTESTGKVVYFTASLPYCVLIIY
LIRGLTLHGATNGLMYMFTPKGSSALSLLAFQIEQLANPKAWINAATQIFFSLGLGFGSLIAFASYNEPS
NNCQKHAIIVSLINSFTSIFASIVTFSIYGFKATFNYENCLKKVSLLLTNTFDLEDGFLTASNLEQVKGY
LASAYPSKYSEMFPQIKNCSLESELDTAVQGTGLAFIVYTEAIKNMEVSQLWSVLYFFMLLMLGIGSMLG
NTAAILTPLTDSKIISSHLPKEAISGLVCLVNCAIGMVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIA
VCYVYGLRRFESDLKAMTGRAVSWYWKVMWAGVSPLLIVSLFVFYLSDYILTGTLKYQAWDASQGQLVTK
DYPAYALAVIGLLVASSTMCIPLAALGTFVQRRLKRGDADPVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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