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Report for CCDS2907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2907.1 Public Homo sapiens 3 TAFA4 24 110 108 CCDS HistoryNCBI Gene:151647Re-query CCDS DB by CCDS ID:2907.1Re-query CCDS DB by GeneID:151647See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2907.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295569.12 ENSP00000295569.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295569.12Link to Ensembl Protein Viewer:ENSP00000295569.7Re-query CCDS DB by Nucleotide ID:ENST00000295569Re-query CCDS DB by Protein ID:ENSP00000295569
Original member Current member NCBI NM_001005527.3 NP_001005527.1 Accepted alive Link to Nucleotide Sequence:NM_001005527.3Link to Protein Sequence:NP_001005527.1Re-query CCDS DB by Nucleotide ID:NM_001005527Re-query CCDS DB by Protein ID:NP_001005527Link to BLAST:NP_001005527.1
Original member Current member NCBI NM_182522.5 NP_872328.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182522.5Link to Protein Sequence:NP_872328.1Re-query CCDS DB by Nucleotide ID:NM_182522Re-query CCDS DB by Protein ID:NP_872328Link to BLAST:NP_872328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005527.1 140 Q96LR4 140 100% 0 0
NP_872328.1 140 Q96LR4 140 100% 0 0

Chromosomal Locations for CCDS 2907.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 68733142 68733153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68739075 68739199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68752863 68753018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68880730 68880845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68885175 68885188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGAGGTCCCCAAGGATGAGAGTCTGTGCTAAGTCAGTGTTGCTGTCGCACTGGCTCTTTCTAGCCTACG
TGTTAATGGTGTGCTGTAAGCTGATGTCCGCCTCAAGCCAGCACCTCCGGGGACATGCAGGTCACCACCA
AATCAAGCAAGGGACCTGTGAGGTGGTCGCCGTGCACAGGTGCTGCAATAAGAACCGCATAGAAGAGCGG
TCACAAACGGTCAAGTGCTCTTGCTTCCCGGGACAGGTGGCGGGCACAACTCGGGCTCAACCTTCTTGTG
TTGAAGCTTCCATTGTGATTCAGAAATGGTGGTGTCACATGAATCCGTGTTTGGAAGGAGAGGATTGTAA
AGTGCTGCCAGATTACTCAGGTTGGTCCTGTAGCAGTGGCAATAAAGTCAAAACTACGAAGGTAACGCGG
TAG

Translation (140 aa):
MRSPRMRVCAKSVLLSHWLFLAYVLMVCCKLMSASSQHLRGHAGHHQIKQGTCEVVAVHRCCNKNRIEER
SQTVKCSCFPGQVAGTTRAQPSCVEASIVIQKWWCHMNPCLEGEDCKVLPDYSGWSCSSGNKVKTTKVTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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