NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43114.1 Public Homo sapiens 3 RIOX2 24 110 108 CCDS HistoryNCBI Gene:84864Re-query CCDS DB by CCDS ID:43114.1Re-query CCDS DB by GeneID:84864See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43114.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333396.11 ENSP00000328251.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000333396.11Link to Ensembl Protein Viewer:ENSP00000328251.6Re-query CCDS DB by Nucleotide ID:ENST00000333396Re-query CCDS DB by Protein ID:ENSP00000328251
Original member Current member EBI ENST00000394198.7 ENSP00000377748.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394198.7Link to Ensembl Protein Viewer:ENSP00000377748.2Re-query CCDS DB by Nucleotide ID:ENST00000394198Re-query CCDS DB by Protein ID:ENSP00000377748
Original member Current member NCBI NM_001042533.3 NP_001035998.1 Accepted alive Link to Nucleotide Sequence:NM_001042533.3Link to Protein Sequence:NP_001035998.1Re-query CCDS DB by Nucleotide ID:NM_001042533Re-query CCDS DB by Protein ID:NP_001035998Link to BLAST:NP_001035998.1
Original member Current member NCBI NM_153182.4 NP_694822.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153182.4Link to Protein Sequence:NP_694822.2Re-query CCDS DB by Nucleotide ID:NM_153182Re-query CCDS DB by Protein ID:NP_694822Link to BLAST:NP_694822.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035998.1 465 Q8IUF8-1 465 100% 0 0
NP_694822.2 465 Q8IUF8-1 465 100% 0 0

Chromosomal Locations for CCDS 43114.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97945184 97945342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97945798 97945887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97947361 97947449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97949844 97950015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97950786 97950888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97954392 97954495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97959051 97959179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97961589 97961708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97967162 97967593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCCAAAGAAAGCAAAGCCTACAGGGAGTGGGAAGGAAGAGGGGCCGGCTCCCTGTAAGCAGATGAAGT
TAGAAGCAGCTGGGGGGCCTTCAGCTTTAAACTTTGACAGTCCCAGTAGTCTCTTTGAAAGTTTAATCTC
GCCCATCAAGACAGAGACTTTTTTCAAGGAATTCTGGGAGCAGAAGCCCCTTCTCATTCAGAGAGATGAC
CCTGCACTGGCCACATACTATGGGTCCCTGTTCAAGCTAACAGATCTGAAGAGTCTGTGCAGCCGGGGGA
TGTACTATGGAAGAGATGTGAATGTCTGCCGGTGTGTCAATGGGAAGAAGAAGGTTTTAAATAAAGATGG
CAAAGCACACTTTCTTCAGCTGAGAAAAGATTTTGATCAGAAAAGGGCAACGATTCAGTTTCACCAACCT
CAGAGATTTAAGGATGAGCTTTGGAGGATCCAGGAGAAGCTGGAATGTTACTTTGGCTCCTTGGTTGGCT
CGAATGTGTACATAACTCCCGCAGGATCTCAGGGCCTGCCGCCCCATTATGATGATGTCGAGGTTTTCAT
CCTGCAGCTGGAGGGAGAGAAACACTGGCGCCTCTACCACCCCACTGTGCCCCTGGCACGAGAGTACAGC
GTGGAGGCCGAGGAAAGGATCGGCAGGCCGGTGCATGAGTTTATGCTGAAGCCGGGTGATTTGTTGTACT
TTCCCAGAGGAACCATTCATCAAGCGGACACTCCTGCGGGGCTGGCCCACTCTACTCACGTGACCATCAG
CACCTACCAGAACAATTCATGGGGAGATTTCCTTTTGGATACCATCTCGGGGCTTGTATTTGATACTGCA
AAGGAAGACGTGGAGTTACGGACCGGCATACCCCGGCAGCTGCTCCTGCAGGTGGAATCCACAACTGTTG
CTACAAGACGATTAAGTGGCTTCCTGAGGACACTTGCAGACCGGCTGGAGGGCACCAAAGAACTGCTTTC
CTCAGACATGAAGAAGGATTTTATTATGCACAGACTCCCCCCTTACTCTGCGGGAGATGGGGCAGAGCTG
TCAACACCAGGTGGAAAGTTACCGAGGCTGGACAGTGTAGTGAGACTGCAGTTTAAAGACCACATTGTCC
TCACAGTACTGCCGGATCAAGATCAATCTGATGAAGCTCAAGAAAAGATGGTGTACATCTATCATTCCTT
AAAGAATAGTAGAGAGACACACATGATGGGAAATGAGGAGGAAACAGAGTTTCATGGACTTCGCTTCCCT
TTGTCACATTTGGATGCACTGAAGCAAATTTGGAATAGTCCAGCTATTTCTGTCAAGGACCTGAAACTTA
CTACAGATGAGGAAAAGGAAAGCCTGGTATTATCCCTCTGGACAGAATGTTTAATTCAAGTAGTCTAG

Translation (465 aa):
MPKKAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDSPSSLFESLISPIKTETFFKEFWEQKPLLIQRDD
PALATYYGSLFKLTDLKSLCSRGMYYGRDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQP
QRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYS
VEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTISGLVFDTA
KEDVELRTGIPRQLLLQVESTTVATRRLSGFLRTLADRLEGTKELLSSDMKKDFIMHRLPPYSAGDGAEL
STPGGKLPRLDSVVRLQFKDHIVLTVLPDQDQSDEAQEKMVYIYHSLKNSRETHMMGNEEETEFHGLRFP
LSHLDALKQIWNSPAISVKDLKLTTDEEKESLVLSLWTECLIQVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH