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Report for CCDS87121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87121.1 Public Homo sapiens 3 SLC35A5 24 110 108 CCDS HistoryNCBI Gene:55032Re-query CCDS DB by CCDS ID:87121.1Re-query CCDS DB by GeneID:55032See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87121.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261034.6 ENSP00000261034.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261034.6Link to Ensembl Protein Viewer:ENSP00000261034.2Re-query CCDS DB by Nucleotide ID:ENST00000261034Re-query CCDS DB by Protein ID:ENSP00000261034
Original member Current member NCBI NM_001348910.2 NP_001335839.1 Accepted alive Link to Nucleotide Sequence:NM_001348910.2Link to Protein Sequence:NP_001335839.1Re-query CCDS DB by Nucleotide ID:NM_001348910Re-query CCDS DB by Protein ID:NP_001335839Link to BLAST:NP_001335839.1

Chromosomal Locations for CCDS 87121.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112563404 112563533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112569171 112569269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112570540 112570670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112573889 112573956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112580546 112580706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112581179 112581297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGAAAAACAGTGCTGTAGTCATCCTGTAATATGCTCCTTGTCAACAATGTATACATTCCTGCTAGGTG
CCATATTCATTGCTTTAAGCTCAAGTCGCATCTTACTAGTGAAGTATTCTGCCAATGAAGAAAACAAGTA
TGATTATCTTCCAACTACTGTGAATGTGTGCTCAGAACTGGTGAAGCTAGTTTTCTGTGTGCTTGTGTCA
TTCTGTGTTATAAAGAAAGATCATCAAAGTAGAAATTTGAAATATGCTTCCTGGAAGGAATTCTCTGATT
TCATGAAGTGGTCCATTCCTGCCTTTCTTTATTTCCTGGATAACTTGATTGTCTTCTATGTCCTGTCCTA
TCTTCAACCAGCCATGGCTGTTATCTTCTCAAATTTTAGCATTATAACAACAGCTCTTCTATTCAGGATA
GTGCTGAAGAGGCGTCTAAACTGGATCCAGTGGGCTTCCCTCCTGACTTTATTTTTGTCTATTGTGGCCT
TGACTGCCGGGACTAAAACTTTACAGCACAACTTGGCAGGACGTGGATTTCATCACGATGCCTTTTTCAG
CCCTTCCAATTCCTGCCTTCTTTTCAGAAGCCCTCCCTGGAATTTTTCTTGGAAGCCCCATCAGTCCTTC
TCTCTATATTTATTTATAATGCCAGCAAGCCTCAAGTTCCGGAATACGCACCTAGGCAAGAAAGGATCCG
AGATCTAA

Translation (235 aa):
MEKQCCSHPVICSLSTMYTFLLGAIFIALSSSRILLVKYSANEENKYDYLPTTVNVCSELVKLVFCVLVS
FCVIKKDHQSRNLKYASWKEFSDFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRI
VLKRRLNWIQWASLLTLFLSIVALTAGTKTLQHNLAGRGFHHDAFFSPSNSCLLFRSPPWNFSWKPHQSF
SLYLFIMPASLKFRNTHLGKKGSEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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