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Report for CCDS54626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54626.1 Public Homo sapiens 3 ZBTB20 24 110 108 CCDS HistoryNCBI Gene:26137Re-query CCDS DB by CCDS ID:54626.1Re-query CCDS DB by GeneID:26137See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54626.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000474710.6 ENSP00000419153.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000474710.6Link to Ensembl Protein Viewer:ENSP00000419153.1Re-query CCDS DB by Nucleotide ID:ENST00000474710Re-query CCDS DB by Protein ID:ENSP00000419153
Original member Current member EBI ENST00000675478.1 ENSP00000501561.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000675478.1Link to Ensembl Protein Viewer:ENSP00000501561.1Re-query CCDS DB by Nucleotide ID:ENST00000675478Re-query CCDS DB by Protein ID:ENSP00000501561
Original member Current member EBI ENST00000676079.1 ENSP00000502480.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676079.1Link to Ensembl Protein Viewer:ENSP00000502480.1Re-query CCDS DB by Nucleotide ID:ENST00000676079Re-query CCDS DB by Protein ID:ENSP00000502480
Original member Current member EBI ENST00000704358.1 ENSP00000515869.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704358.1Link to Ensembl Protein Viewer:ENSP00000515869.1Re-query CCDS DB by Nucleotide ID:ENST00000704358Re-query CCDS DB by Protein ID:ENSP00000515869
Original member Current member NCBI NM_001164342.2 NP_001157814.1 Accepted alive Link to Nucleotide Sequence:NM_001164342.2Link to Protein Sequence:NP_001157814.1Re-query CCDS DB by Nucleotide ID:NM_001164342Re-query CCDS DB by Protein ID:NP_001157814Link to BLAST:NP_001157814.1
Original member Current member NCBI NM_001348800.3 NP_001335729.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001348800.3Link to Protein Sequence:NP_001335729.1Re-query CCDS DB by Nucleotide ID:NM_001348800Re-query CCDS DB by Protein ID:NP_001335729Link to BLAST:NP_001335729.1
Original member Current member NCBI NM_001348803.3 NP_001335732.1 Accepted alive Link to Nucleotide Sequence:NM_001348803.3Link to Protein Sequence:NP_001335732.1Re-query CCDS DB by Nucleotide ID:NM_001348803Re-query CCDS DB by Protein ID:NP_001335732Link to BLAST:NP_001335732.1
Original member Current member NCBI NM_001393393.1 NP_001380322.1 Accepted alive Link to Nucleotide Sequence:NM_001393393.1Link to Protein Sequence:NP_001380322.1Re-query CCDS DB by Nucleotide ID:NM_001393393Re-query CCDS DB by Protein ID:NP_001380322Link to BLAST:NP_001380322.1
Original member Current member NCBI NM_001393394.1 NP_001380323.1 Accepted alive Link to Nucleotide Sequence:NM_001393394.1Link to Protein Sequence:NP_001380323.1Re-query CCDS DB by Nucleotide ID:NM_001393394Re-query CCDS DB by Protein ID:NP_001380323Link to BLAST:NP_001380323.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157814.1 741 Q9HC78-1 741 100% 0 0
NP_001335729.1 741 Q9HC78-1 741 100% 0 0
NP_001335732.1 741 Q9HC78-1 741 100% 0 0
NP_001380322.1 741 Q9HC78-1 741 100% 0 0
NP_001380323.1 741 Q9HC78-1 741 100% 0 0

Chromosomal Locations for CCDS 54626.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 114339005 114339426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114350274 114351878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114380217 114380404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 114380777 114380787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2226 nt):
ATGCTAGAACGGAAGAAACCCAAGACAGCTGAAAACCAGAAGGCATCTGAGGAGAATGAGATTACTCAGC
CGGGTGGATCCAGCGCCAAGCCGGGCCTTCCCTGCCTGAACTTTGAAGCTGTTTTGTCTCCAGACCCAGC
CCTCATCCACTCAACACATTCACTGACAAACTCTCACGCTCACACCGGGTCATCTGATTGTGACATCAGT
TGCAAGGGGATGACCGAGCGCATTCACAGCATCAACCTTCACAACTTCAGCAATTCCGTGCTCGAGACCC
TCAACGAGCAGCGCAACCGTGGCCACTTCTGTGACGTAACGGTGCGCATCCACGGGAGCATGCTGCGCGC
ACACCGCTGCGTGCTGGCAGCCGGCAGCCCCTTCTTCCAGGACAAACTGCTGCTTGGCTACAGCGACATC
GAGATCCCGTCGGTGGTGTCAGTGCAGTCAGTGCAAAAGCTCATTGACTTCATGTACAGCGGCGTGCTAC
GGGTCTCGCAGTCGGAAGCTCTGCAGATCCTCACGGCCGCCAGCATCCTGCAGATCAAAACAGTCATCGA
CGAGTGCACGCGCATCGTGTCACAGAACGTGGGCGATGTGTTCCCGGGGATCCAGGACTCGGGCCAGGAC
ACGCCGCGGGGCACTCCCGAGTCAGGCACGTCAGGCCAGAGCAGCGACACGGAGTCGGGCTACCTGCAGA
GCCACCCACAGCACAGCGTGGACAGGATCTACTCGGCACTCTACGCGTGCTCCATGCAGAATGGCAGCGG
CGAGCGCTCTTTTTACAGCGGCGCAGTGGTCAGCCACCACGAGACTGCGCTCGGCCTGCCCCGCGACCAC
CACATGGAAGACCCCAGCTGGATCACACGCATCCATGAGCGCTCGCAGCAGATGGAGCGCTACCTGTCCA
CCACCCCCGAGACCACGCACTGCCGCAAGCAGCCCCGGCCTGTGCGCATCCAGACCCTAGTGGGCAACAT
CCACATCAAGCAGGAGATGGAGGACGATTACGACTACTACGGGCAGCAAAGGGTGCAGATCCTGGAACGC
AACGAATCCGAGGAGTGCACGGAAGACACAGACCAGGCCGAGGGCACCGAGAGTGAGCCCAAAGGTGAAA
GCTTCGACTCGGGCGTCAGCTCCTCCATAGGCACCGAGCCTGACTCGGTGGAGCAGCAGTTTGGGCCTGG
GGCGGCGCGGGACAGCCAGGCTGAACCCACCCAACCCGAGCAGGCTGCAGAAGCCCCCGCTGAGGGTGGT
CCGCAGACAAACCAGCTAGAAACAGGTGCTTCCTCTCCGGAGAGAAGCAATGAAGTGGAGATGGACAGCA
CTGTTATCACTGTCAGCAACAGCTCCGACAAGAGCGTCCTACAACAGCCTTCGGTCAACACGTCCATCGG
GCAGCCATTGCCAAGTACCCAGCTCTACTTACGCCAGACAGAAACCCTCACCAGCAACCTGAGGATGCCT
CTGACCTTGACCAGCAACACGCAGGTCATTGGCACAGCTGGCAACACCTACCTGCCAGCCCTCTTCACTA
CCCAGCCCGCGGGCAGTGGCCCCAAGCCTTTCCTCTTCAGCCTGCCACAGCCCCTGGCAGGCCAGCAGAC
CCAGTTTGTGACAGTGTCCCAGCCCGGTCTGTCGACCTTTACTGCACAGCTGCCAGCGCCACAGCCCCTG
GCCTCATCCGCAGGCCACAGCACAGCCAGTGGGCAAGGCGAAAAAAAGCCTTATGAGTGCACTCTCTGCA
ACAAGACTTTCACCGCCAAACAGAACTACGTCAAGCACATGTTCGTACACACAGGTGAGAAGCCCCACCA
ATGCAGCATCTGTTGGCGCTCCTTCTCCTTAAAGGATTACCTTATCAAGCACATGGTGACACACACAGGA
GTGAGGGCATACCAGTGTAGTATCTGCAACAAGCGCTTCACCCAGAAGAGCTCCCTCAACGTGCACATGC
GCCTCCACCGGGGAGAGAAGTCCTACGAGTGCTACATCTGCAAAAAGAAGTTCTCTCACAAGACCCTCCT
GGAGCGACACGTGGCCCTGCACAGTGCCAGCAATGGGACCCCCCCTGCAGGCACACCCCCAGGTGCCCGC
GCTGGCCCCCCAGGCGTGGTGGCCTGCACGGAGGGGACCACTTACGTCTGCTCCGTCTGCCCAGCAAAGT
TTGACCAAATCGAGCAGTTCAACGACCACATGAGGATGCATGTGTCTGACGGATAA

Translation (741 aa):
MLERKKPKTAENQKASEENEITQPGGSSAKPGLPCLNFEAVLSPDPALIHSTHSLTNSHAHTGSSDCDIS
CKGMTERIHSINLHNFSNSVLETLNEQRNRGHFCDVTVRIHGSMLRAHRCVLAAGSPFFQDKLLLGYSDI
EIPSVVSVQSVQKLIDFMYSGVLRVSQSEALQILTAASILQIKTVIDECTRIVSQNVGDVFPGIQDSGQD
TPRGTPESGTSGQSSDTESGYLQSHPQHSVDRIYSALYACSMQNGSGERSFYSGAVVSHHETALGLPRDH
HMEDPSWITRIHERSQQMERYLSTTPETTHCRKQPRPVRIQTLVGNIHIKQEMEDDYDYYGQQRVQILER
NESEECTEDTDQAEGTESEPKGESFDSGVSSSIGTEPDSVEQQFGPGAARDSQAEPTQPEQAAEAPAEGG
PQTNQLETGASSPERSNEVEMDSTVITVSNSSDKSVLQQPSVNTSIGQPLPSTQLYLRQTETLTSNLRMP
LTLTSNTQVIGTAGNTYLPALFTTQPAGSGPKPFLFSLPQPLAGQQTQFVTVSQPGLSTFTAQLPAPQPL
ASSAGHSTASGQGEKKPYECTLCNKTFTAKQNYVKHMFVHTGEKPHQCSICWRSFSLKDYLIKHMVTHTG
VRAYQCSICNKRFTQKSSLNVHMRLHRGEKSYECYICKKKFSHKTLLERHVALHSASNGTPPAGTPPGAR
AGPPGVVACTEGTTYVCSVCPAKFDQIEQFNDHMRMHVSDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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