NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3307.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3307.1 Public Homo sapiens 3 GP5 24 110 108 CCDS HistoryNCBI Gene:2814Re-query CCDS DB by CCDS ID:3307.1Re-query CCDS DB by GeneID:2814See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3307.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401815.1 ENSP00000383931.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401815.1Link to Ensembl Protein Viewer:ENSP00000383931.1Re-query CCDS DB by Nucleotide ID:ENST00000401815Re-query CCDS DB by Protein ID:ENSP00000383931
Original member Current member EBI ENST00000692618.1 ENSP00000509337.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000692618.1Link to Ensembl Protein Viewer:ENSP00000509337.1Re-query CCDS DB by Nucleotide ID:ENST00000692618Re-query CCDS DB by Protein ID:ENSP00000509337
Original member Current member NCBI NM_004488.2 NP_004479.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004488.2Link to Protein Sequence:NP_004479.1Re-query CCDS DB by Nucleotide ID:NM_004488Re-query CCDS DB by Protein ID:NP_004479Link to BLAST:NP_004479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004479.1 560 P40197 560 100% 0 0

Chromosomal Locations for CCDS 3307.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 194396600 194398282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGCTGAGGGGGACTCTACTGTGCGCGGTGCTCGGGCTTCTGCGCGCCCAGCCCTTCCCCTGTCCGCCAG
CTTGCAAGTGTGTCTTCCGGGACGCCGCGCAGTGCTCGGGGGGCGACGTGGCGCGCATCTCCGCGCTAGG
CCTGCCCACCAACCTCACGCACATCCTGCTCTTCGGAATGGGCCGCGGCGTCCTGCAGAGCCAGAGCTTC
AGCGGCATGACCGTCCTGCAGCGCCTCATGATCTCCGACAGCCACATTTCCGCCGTTGCCCCCGGCACCT
TCAGTGACCTGATAAAACTGAAAACCCTGAGGCTGTCGCGCAACAAAATCACGCATCTTCCAGGTGCGCT
GCTGGATAAGATGGTGCTCCTGGAGCAGTTGTTTTTGGACCACAATGCGCTAAGGGGCATTGACCAAAAC
ATGTTTCAGAAACTGGTTAACCTGCAGGAGCTCGCTCTGAACCAGAATCAGCTCGATTTCCTTCCTGCCA
GTCTCTTCACGAATCTGGAGAACCTGAAGTTGTTGGATTTATCGGGAAACAACCTGACCCACCTGCCCAA
GGGGTTGCTTGGAGCACAGGCTAAGCTCGAGAGACTTCTGCTCCACTCGAACCGCCTTGTGTCTCTGGAT
TCGGGGCTGTTGAACAGCCTGGGCGCCCTGACGGAGCTGCAGTTCCACCGAAATCACATCCGTTCCATCG
CACCCGGGGCCTTCGACCGGCTCCCAAACCTCAGTTCTTTGACGCTTTCGAGAAACCACCTTGCGTTTCT
CCCCTCTGCGCTCTTTCTTCATTCGCACAATCTGACTCTGTTGACTCTGTTCGAGAACCCGCTGGCAGAG
CTCCCGGGGGTGCTCTTCGGGGAGATGGGGGGCCTGCAGGAGCTGTGGCTGAACCGCACCCAGCTGCGCA
CCCTGCCCGCCGCCGCCTTCCGCAACCTGAGCCGCCTGCGGTACTTAGGGGTGACTCTGAGCCCGCGGCT
GAGCGCGCTTCCGCAGGGCGCCTTCCAGGGCCTTGGCGAGCTCCAGGTGCTCGCCCTGCACTCCAACGGC
CTGACCGCCCTCCCCGACGGCTTGCTGCGCGGCCTCGGCAAGCTGCGCCAGGTGTCCCTGCGCCGCAACA
GGCTGCGCGCCCTGCCCCGTGCCCTCTTCCGCAATCTCAGCAGCCTGGAGAGCGTCCAGCTCGACCACAA
CCAGCTGGAGACCCTGCCTGGCGACGTGTTTGGGGCTCTGCCCCGGCTGACGGAGGTCCTGTTGGGGCAC
AACTCCTGGCGCTGCGACTGTGGCCTGGGGCCCTTCCTGGGGTGGCTGCGGCAGCACCTAGGCCTCGTGG
GCGGGGAAGAGCCCCCACGGTGCGCAGGCCCTGGGGCGCACGCCGGCCTGCCGCTCTGGGCCCTGCCGGG
GGGTGACGCGGAGTGCCCGGGCCCCCGGGGCCCGCCTCCCCGCCCCGCTGCGGACAGCTCCTCGGAAGCC
CCTGTCCACCCAGCCTTGGCTCCCAACAGCTCAGAACCCTGGGTGTGGGCCCAGCCGGTGACCACGGGCA
AAGGTCAAGATCATAGTCCGTTCTGGGGGTTTTATTTTCTGCTTTTAGCTGTTCAGGCCATGATCACCGT
GATCATCGTGTTTGCTATGATTAAAATTGGCCAACTCTTTCGAAAATTAATCAGAGAGAGAGCCCTTGGG
TAA

Translation (560 aa):
MLRGTLLCAVLGLLRAQPFPCPPACKCVFRDAAQCSGGDVARISALGLPTNLTHILLFGMGRGVLQSQSF
SGMTVLQRLMISDSHISAVAPGTFSDLIKLKTLRLSRNKITHLPGALLDKMVLLEQLFLDHNALRGIDQN
MFQKLVNLQELALNQNQLDFLPASLFTNLENLKLLDLSGNNLTHLPKGLLGAQAKLERLLLHSNRLVSLD
SGLLNSLGALTELQFHRNHIRSIAPGAFDRLPNLSSLTLSRNHLAFLPSALFLHSHNLTLLTLFENPLAE
LPGVLFGEMGGLQELWLNRTQLRTLPAAAFRNLSRLRYLGVTLSPRLSALPQGAFQGLGELQVLALHSNG
LTALPDGLLRGLGKLRQVSLRRNRLRALPRALFRNLSSLESVQLDHNQLETLPGDVFGALPRLTEVLLGH
NSWRCDCGLGPFLGWLRQHLGLVGGEEPPRCAGPGAHAGLPLWALPGGDAECPGPRGPPPRPAADSSSEA
PVHPALAPNSSEPWVWAQPVTTGKGQDHSPFWGFYFLLLAVQAMITVIIVFAMIKIGQLFRKLIRERALG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH