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Report for CCDS33978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33978.1 Public Homo sapiens 4 DCAF4L1 24 110 108 CCDS HistoryNCBI Gene:285429Re-query CCDS DB by CCDS ID:33978.1Re-query CCDS DB by GeneID:285429See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33978.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333141.7 ENSP00000327796.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333141.7Link to Ensembl Protein Viewer:ENSP00000327796.5Re-query CCDS DB by Nucleotide ID:ENST00000333141Re-query CCDS DB by Protein ID:ENSP00000327796
Original member Current member NCBI NM_001029955.4 NP_001025126.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001029955.4Link to Protein Sequence:NP_001025126.2Re-query CCDS DB by Nucleotide ID:NM_001029955Re-query CCDS DB by Protein ID:NP_001025126Link to BLAST:NP_001025126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025126.2 396 Q3SXM0 396 100% 0 0

Chromosomal Locations for CCDS 33978.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41981793 41982983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGAGGCTGAAAGGCTGCGACTCCTCGAGGAAGAGGCCAAGCTGAAAAAGGTAGCCAGAATGGGATTTA
ATGCATCTTCCATGCTCCGAAAAAGCCAGCTAGGTTTCCTCAACGTCACCAGTTACTCCCGTTTAGCCAA
CGAGCTGCGTGTGAGCTGCATGGAGCGGAAAAAGGTCCAAATTCGGAGCTTGGATCCCTCCTCTTTGGCG
AGCGACCGATTTAACTTCATTCTGGCGAGTACCAACAGCGACCAGCTCTTCGTAGTGAACCAGGTCGAAG
TCGAAGGCTCCAAGTACGGCATCATCAGCCTGCGAACTCTGAAGATCCCTTCGTTCCACGTGTACGTGCT
CAGAAACCTCTACGTCCCCAACCGGAAGGTGAAGTCCCTGTGCTGGGCCTCGCTGAACCAGTTGGACTCT
CACGTTCTGCTGTGCTTCGAGGGAATCACAGATGCTCCAAGCTGTGCAGTGCTGCTCCCAGCGTCGCGGT
TCTTAAGTGTTCACACAAGAGTTAACCAGCCTGGCATGCTCTGCAGTTTCCAGATCCCAGAGGCCTGGTC
CTGTGCGTGGTCCCTCAACACCCGGGCATATCACTGCTTTAGTGCAGGCTTGTCTCAGCAGGTCCTGTTG
ACCAGCGTGGCGACGGGACACCAGCAGTCATTTGATACCAGCAGTGATGTCTTGGCCCAGCAGTTTGCTA
GTACGGCTCCTTTGCTGTTTAATGGCTGTCGCTCCGGGGAGATCTTTGCCATTGATCTGCGTTGTAGAAA
TCGAGGCAAGGGGTGGAGGGCCACTCGCCTGTTCCATGACTCAGCAGTGACCTCTGTGCAAATCCTCCAA
GAAGAGCAATGCCTGATGGCATCAGACATGACTGGAAAGATCAAGCTGTGGGATCTGAGGGCCACTAAAT
GTGTAAGGCAGTACGAAGGTCACGTGAATGAGTCCGCCTATCTGCCCCTGCATGTGCACGAGGAAGAGGG
AATCGTGGTGGCAGTGGGCCAGGACTGCTACACGAGAATCTGGAGCCTCCATGATGCCCACCTGCTCAGA
ACCATCCCTTCCCCGTACTCTGCCTCCGAGGACGACATTCCCAGCGTGGCCTTCGCTTCTCGGCTCGGGG
GCATCCGGGGAGCAGCACCAGGGCTGCTCATGGCTGTCCGGCAGGACCTTTATTGTTTCCCCTTCAGCTA
A

Translation (396 aa):
MEAERLRLLEEEAKLKKVARMGFNASSMLRKSQLGFLNVTSYSRLANELRVSCMERKKVQIRSLDPSSLA
SDRFNFILASTNSDQLFVVNQVEVEGSKYGIISLRTLKIPSFHVYVLRNLYVPNRKVKSLCWASLNQLDS
HVLLCFEGITDAPSCAVLLPASRFLSVHTRVNQPGMLCSFQIPEAWSCAWSLNTRAYHCFSAGLSQQVLL
TSVATGHQQSFDTSSDVLAQQFASTAPLLFNGCRSGEIFAIDLRCRNRGKGWRATRLFHDSAVTSVQILQ
EEQCLMASDMTGKIKLWDLRATKCVRQYEGHVNESAYLPLHVHEEEGIVVAVGQDCYTRIWSLHDAHLLR
TIPSPYSASEDDIPSVAFASRLGGIRGAAPGLLMAVRQDLYCFPFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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