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Report for CCDS3576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3576.1 Public Homo sapiens 4 NUP54 24 110 108 CCDS HistoryNCBI Gene:53371Re-query CCDS DB by CCDS ID:3576.1Re-query CCDS DB by GeneID:53371See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3576.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264883.8 ENSP00000264883.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264883.8Link to Ensembl Protein Viewer:ENSP00000264883.3Re-query CCDS DB by Nucleotide ID:ENST00000264883Re-query CCDS DB by Protein ID:ENSP00000264883
Original member Current member NCBI NM_017426.4 NP_059122.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017426.4Link to Protein Sequence:NP_059122.2Re-query CCDS DB by Nucleotide ID:NM_017426Re-query CCDS DB by Protein ID:NP_059122Link to BLAST:NP_059122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059122.2 507 Q7Z3B4-1 507 100% 0 0

Chromosomal Locations for CCDS 3576.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 76115366 76115494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76117664 76117774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76118075 76118194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76124649 76124756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76130656 76130749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76131230 76131284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76132523 76132719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76134175 76134362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76136186 76136412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76144149 76144292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76144390 76144473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76148308 76148374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGCCTTCAATTTTGGGGCTCCCTCGGGCACCTCCGGTACCGCTGCAGCCACCGCGGCCCCCGCGGGTG
GGTTTGGAGGATTTGGGACAACATCTACAACTGCAGGTTCTGCATTCAGCTTTTCTGCCCCAACTAACAC
AGGCACTACTGGACTCTTTGGTGGTACTCAGAACAAAGGTTTTGGATTTGGTACTGGTTTTGGCACAACA
ACGGGAACTAGTACTGGTTTAGGTACTGGTTTGGGAACTGGACTGGGATTTGGAGGATTTAATACACAGC
AGCAGCAGCAAACTACATTAGGTGGTCTCTTCAGTCAGCCTACACAAGCTCCTACCCAGTCCAACCAGCT
GATAAATACTGCGAGTGCTCTTTCTGCTCCAACGCTGTTGGGAGATGAGAGAGATGCTATTTTGGCAAAA
TGGAATCAACTGCAGGCCTTTTGGGGAACAGGAAAAGGGTATTTCAACAATAATATTCCGCCAGTGGAAT
TCACACAAGAAAATCCCTTTTGCCGATTTAAGGCAGTAGGTTATAGTTGCATGCCCAGTAATAAAGATGA
AGATGGGCTAGTGGTTTTAGTTTTCAACAAAAAAGAAACAGAGATTCGAAGCCAACAACAACAGTTGGTA
GAATCATTGCATAAAGTTTTGGGAGGAAACCAGACCCTTACTGTAAATGTAGAGGGCACTAAAACATTGC
CAGATGATCAGACAGAAGTTGTTATTTATGTTGTTGAGCGTTCGCCAAATGGTACTTCAAGAAGAGTTCC
AGCTACAACGCTATATGCCCATTTTGAACAAGCCAATATAAAAACACAATTGCAGCAACTTGGTGTAACC
CTTTCTATGACTAGAACAGAACTTTCTCCTGCACAGATCAAACAGCTTTTACAGAATCCTCCTGCTGGTG
TTGATCCTATTATCTGGGAACAGGCCAAGGTAGATAACCCTGATTCTGAAAAGTTAATTCCTGTACCAAT
GGTGGGTTTTAAGGAACTTCTCCGAAGACTGAAGGTTCAAGATCAGATGACTAAGCAGCATCAAACCAGA
TTAGATATCATATCTGAAGATATTAGTGAGCTACAAAAGAATCAAACTACATCTGTAGCCAAAATTGCAC
AATACAAGAGGAAACTCATGGATCTTTCCCATAGAACTTTACAGGTCCTAATCAAACAGGAAATTCAAAG
GAAGAGTGGTTATGCCATTCAGGCTGATGAAGAGCAGTTGCGAGTTCAGCTGGATACGATTCAGGGTGAA
CTAAATGCACCTACTCAGTTCAAGGGCCGACTAAATGAATTGATGTCTCAAATCAGGATGCAGAATCATT
TTGGAGCAGTCAGATCTGAAGAAAGGTATTACATAGATGCAGATCTGTTACGAGAAATCAAGCAGCATTT
GAAACAACAACAGGAAGGCCTTAGCCATTTGATTAGCATCATTAAAGACGATCTAGAAGATATAAAGCTG
GTCGAACATGGATTGAATGAAACCATCCACATCAGAGGTGGTGTCTTTAGTTGA

Translation (507 aa):
MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFGTT
TGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLINTASALSAPTLLGDERDAILAK
WNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPSNKDEDGLVVLVFNKKETEIRSQQQQLV
ESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVT
LSMTRTELSPAQIKQLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTR
LDIISEDISELQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGE
LNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKL
VEHGLNETIHIRGGVFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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