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Report for CCDS3736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3736.1 Public Homo sapiens 4 MFSD8 24 110 108 CCDS HistoryNCBI Gene:256471Re-query CCDS DB by CCDS ID:3736.1Re-query CCDS DB by GeneID:256471See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3736.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296468.8 ENSP00000296468.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000296468.8Link to Ensembl Protein Viewer:ENSP00000296468.3Re-query CCDS DB by Nucleotide ID:ENST00000296468Re-query CCDS DB by Protein ID:ENSP00000296468
Original member Current member EBI ENST00000641686.2 ENSP00000493218.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641686.2Link to Ensembl Protein Viewer:ENSP00000493218.2Re-query CCDS DB by Nucleotide ID:ENST00000641686Re-query CCDS DB by Protein ID:ENSP00000493218
Original member Current member EBI ENST00000641434.1 ENSP00000493279.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641434.1Link to Ensembl Protein Viewer:ENSP00000493279.1Re-query CCDS DB by Nucleotide ID:ENST00000641434Re-query CCDS DB by Protein ID:ENSP00000493279
Original member Current member EBI ENST00000641748.1 ENSP00000493330.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641748.1Link to Ensembl Protein Viewer:ENSP00000493330.1Re-query CCDS DB by Nucleotide ID:ENST00000641748Re-query CCDS DB by Protein ID:ENSP00000493330
Original member Current member NCBI NM_001371596.2 NP_001358525.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371596.2Link to Protein Sequence:NP_001358525.1Re-query CCDS DB by Nucleotide ID:NM_001371596Re-query CCDS DB by Protein ID:NP_001358525Link to BLAST:NP_001358525.1
Original member Current member NCBI NM_152778.4 NP_689991.1 Accepted alive Link to Nucleotide Sequence:NM_152778.4Link to Protein Sequence:NP_689991.1Re-query CCDS DB by Nucleotide ID:NM_152778Re-query CCDS DB by Protein ID:NP_689991Link to BLAST:NP_689991.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358525.1 518 Q8NHS3-1 518 100% 0 0
NP_689991.1 518 Q8NHS3-1 518 100% 0 0

Chromosomal Locations for CCDS 3736.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127920630 127920836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127921524 127921771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127921860 127921963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127930683 127930817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127932985 127933093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127938783 127938838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127939853 127939997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127942045 127942158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127943752 127943992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127949804 127949847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127957501 127957592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127965072 127965133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGCCGGCCTGCGGAACGAAAGTGAACAGGAGCCGCTCTTAGGCGACACACCTGGAAGCAGAGAATGGG
ACATTTTAGAGACTGAAGAGCATTATAAGAGCCGATGGAGATCTATTAGGATTTTATATCTTACTATGTT
TCTCAGCAGTGTAGGGTTTTCTGTAGTGATGATGTCCATATGGCCATATCTCCAAAAGATTGATCCGACA
GCTGATACAAGTTTTTTGGGCTGGGTTATTGCTTCATATAGTCTTGGCCAAATGGTAGCTTCACCTATAT
TTGGTTTATGGTCTAATTATAGACCAAGAAAAGAGCCTCTTATTGTCTCCATCTTGATTTCCGTGGCAGC
CAACTGCCTCTATGCATATCTCCACATCCCAGCTTCTCATAATAAATACTACATGCTGGTTGCTCGTGGA
TTGTTGGGAATTGGAGCAGGAAATGTAGCAGTTGTTAGATCATATACTGCTGGTGCTACTTCCCTTCAGG
AAAGAACAAGTTCCATGGCAAACATAAGCATGTGTCAAGCATTAGGTTTTATTCTAGGTCCAGTTTTTCA
GACTTGTTTTACATTCCTTGGAGAAAAAGGTGTGACATGGGATGTGATTAAACTGCAGATAAACATGTAT
ACAACACCAGTTTTACTTAGCGCCTTCCTGGGAATTTTAAATATTATTCTGATCCTTGCCATACTAAGAG
AACATCGTGTGGATGACTCAGGAAGACAGTGTAAAAGTATTAATTTTGAAGAAGCAAGTACAGATGAAGC
TCAGGTTCCCCAAGGAAATATTGACCAGGTTGCTGTTGTGGCCATCAATGTTCTGTTTTTTGTGACTCTA
TTTATCTTTGCCCTTTTTGAAACCATCATTACTCCATTAACAATGGATATGTATGCCTGGACTCAAGAAC
AAGCTGTGTTATATAATGGCATAATACTTGCTGCTCTTGGGGTTGAAGCCGTTGTTATTTTCTTAGGAGT
TAAGTTGCTTTCCAAAAAGATTGGCGAGCGTGCTATTCTACTGGGAGGACTCATCGTTGTATGGGTTGGC
TTCTTTATCTTGTTACCTTGGGGAAATCAATTTCCCAAAATACAGTGGGAAGATTTGCACAATAATTCAA
TCCCTAATACCACATTTGGGGAAATTATTATTGGTCTTTGGAAGTCTCCAATGGAAGATGACAATGAAAG
ACCAACTGGTTGCTCGATTGAACAAGCCTGGTGCCTCTACACCCCGGTGATTCATCTGGCCCAGTTCCTT
ACATCAGCTGTGCTAATAGGATTAGGCTATCCAGTCTGCAATCTTATGTCCTATACTCTATATTCAAAAA
TTCTAGGACCAAAACCTCAGGGTGTATACATGGGCTGGTTAACAGCATCTGGAAGTGGAGCCCGGATTCT
TGGGCCTATGTTCATCAGCCAAGTGTATGCTCACTGGGGACCACGATGGGCATTCAGCCTGGTGTGTGGA
ATAATAGTGCTCACCATCACCCTCCTGGGAGTGGTTTACAAAAGACTCATTGCTCTTTCTGTAAGATATG
GGAGGATTCAGGAATAA

Translation (518 aa):
MAGLRNESEQEPLLGDTPGSREWDILETEEHYKSRWRSIRILYLTMFLSSVGFSVVMMSIWPYLQKIDPT
ADTSFLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISVAANCLYAYLHIPASHNKYYMLVARG
LLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFILGPVFQTCFTFLGEKGVTWDVIKLQINMY
TTPVLLSAFLGILNIILILAILREHRVDDSGRQCKSINFEEASTDEAQVPQGNIDQVAVVAINVLFFVTL
FIFALFETIITPLTMDMYAWTQEQAVLYNGIILAALGVEAVVIFLGVKLLSKKIGERAILLGGLIVVWVG
FFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIIGLWKSPMEDDNERPTGCSIEQAWCLYTPVIHLAQFL
TSAVLIGLGYPVCNLMSYTLYSKILGPKPQGVYMGWLTASGSGARILGPMFISQVYAHWGPRWAFSLVCG
IIVLTITLLGVVYKRLIALSVRYGRIQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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