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Report for CCDS75222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75222.1 Public Homo sapiens 5 PDCD6 24 110 108 CCDS HistoryNCBI Gene:10016Re-query CCDS DB by CCDS ID:75222.1Re-query CCDS DB by GeneID:10016See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75222.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618970.4 ENSP00000482332.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618970.4Link to Ensembl Protein Viewer:ENSP00000482332.1Re-query CCDS DB by Nucleotide ID:ENST00000618970Re-query CCDS DB by Protein ID:ENSP00000482332
Original member Current member NCBI NM_001267557.2 NP_001254486.1 Accepted alive Link to Nucleotide Sequence:NM_001267557.2Link to Protein Sequence:NP_001254486.1Re-query CCDS DB by Nucleotide ID:NM_001267557Re-query CCDS DB by Protein ID:NP_001254486Link to BLAST:NP_001254486.1

Chromosomal Locations for CCDS 75222.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 271721 271821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 272711 272772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 311293 311402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 314417 314515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGG
ACCAGAGCTTCCTGTGGAACGTTTTCCAGAGGGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGA
GCTTCAGCAAGCTCTCTCCAACGGCTACCGGCTCTCTGACCAGTTCCACGACATCCTCATTCGAAAGTTT
GACAGGCAGGGACGGGGGCAGATTGCCTTCGACGACTTCATCCAGGGCTGCATCGTCCTGCAGAGGTTGA
CGGATATATTCAGACGTTACGACACGGATCAGGACGGCTGGATTCAGGTGTCGTACGAACAGTACCTGTC
CATGGTCTTCAGTATCGTATGA

Translation (123 aa):
MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGYRLSDQFHDILIRKF
DRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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