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Report for CCDS34212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34212.1 Public Homo sapiens 5 TRIM36 24 110 108 CCDS HistoryNCBI Gene:55521Re-query CCDS DB by CCDS ID:34212.1Re-query CCDS DB by GeneID:55521See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34212.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379617.2 ENSP00000368937.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379617.2Link to Ensembl Protein Viewer:ENSP00000368937.2Re-query CCDS DB by Nucleotide ID:ENST00000379617Re-query CCDS DB by Protein ID:ENSP00000368937
Original member Current member NCBI NM_001017398.2 NP_001017398.1 Accepted alive Link to Nucleotide Sequence:NM_001017398.2Link to Protein Sequence:NP_001017398.1Re-query CCDS DB by Nucleotide ID:NM_001017398Re-query CCDS DB by Protein ID:NP_001017398Link to BLAST:NP_001017398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017398.1 61 Q9NQ86-3 61 100% 0 0

Chromosomal Locations for CCDS 34212.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115177750 115177872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115179975 115180037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (186 nt):
ATGTCGGAGTCTGGGGAGATGAGTGAATTTGGCTACATCATGGAATTGATAGCTAAAGGCAAGGCTTCAG
CAATGGGCCTGCAGCAAACCCATGAGCATTCCCGGTTGACTTCTAAAGGTGGAGAGGCCCGCTGTCCCTT
TGAAATCTCTGAGGTTGGAAAGCAGTCTCTCCCAAGAAGAACTTAG

Translation (61 aa):
MSESGEMSEFGYIMELIAKGKASAMGLQQTHEHSRLTSKGGEARCPFEISEVGKQSLPRRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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