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Report for CCDS47278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47278.1 Public Homo sapiens 5 SLC4A9 24 110 108 CCDS HistoryNCBI Gene:83697Re-query CCDS DB by CCDS ID:47278.1Re-query CCDS DB by GeneID:83697See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506757.7 ENSP00000424424.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000506757.7Link to Ensembl Protein Viewer:ENSP00000424424.1Re-query CCDS DB by Nucleotide ID:ENST00000506757Re-query CCDS DB by Protein ID:ENSP00000424424
Original member Current member NCBI NM_031467.3 NP_113655.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031467.3Link to Protein Sequence:NP_113655.2Re-query CCDS DB by Nucleotide ID:NM_031467Re-query CCDS DB by Protein ID:NP_113655Link to BLAST:NP_113655.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113655.2 959 Q96Q91-3 959 100% 0 0

Chromosomal Locations for CCDS 47278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140360237 140360466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140360812 140360972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140361254 140361367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140361808 140361863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140362017 140362174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140362445 140362532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140362912 140363066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140363439 140363555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140363728 140363902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140364054 140364187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140364363 140364625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140365520 140365578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140365834 140366022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140366151 140366264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140367420 140367581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140367720 140367898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140368587 140368659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140371095 140371163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140371451 140371624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140372242 140372397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140372745 140372798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2880 nt):
ATGGAAATGAAGCTGCCAGGCCAGGAAGGGTTTGAAGCCTCCAGTGCTCCTAGAAATATTCCTTCAGGGG
AGCTGGACAGCAACCCTGACCCTGGCACCGGCCCCAGCCCTGATGGCCCCTCAGACACAGAGAGCAAGGA
ACTGGGAGTACCCAAAGACCCTCTGCTCTTCATTCAGCTGAATGAGCTGCTGGGCTGGCCCCAGGCGCTG
GAGTGGAGAGAGACAGGCAGGTGGGTACTGTTTGAGGAGAAGTTGGAGGTGGCTGCAGGCCGGTGGAGTG
CCCCCCACGTGCCCACCCTGGCACTGCCCAGCCTCCAGAAGCTCCGCAGCCTGCTGGCCGAGGGCCTTGT
ACTGCTGGACTGCCCAGCTCAGAGCCTCCTGGAGCTCGTGGAGCAGGTGACCAGGGTGGAGTCGCTGAGC
CCAGAGCTGAGAGGGCAGTTGCAGGCCTTGCTGCTGCAGAGACCCCAGCATTACAACCAGACCACAGGCA
CCAGGCCCTGCTGGGGCTCTACTCATCCAAGAAAGGCTTCTGACAATGAGGAAGCCCCCCTGAGGGAACA
GTGTCAGAACCCCCTGAGACAGAAGCTACCTCCAGGAGCTGAGGCAGGGACTGTGCTGGCAGGGGAGCTG
GGCTTCCTGGCACAGCCACTGGGAGCCTTTGTTCGACTGCGGAACCCTGTGGTACTGGGGTCCCTTACTG
AGGTGTCCCTCCCAAGCAGGTTTTTCTGCCTTCTCCTGGGCCCCTGTATGCTGGGAAAGGGCTACCATGA
GATGGGACGGGCAGCAGCTGTCCTCCTCAGTGACCCGCAATTCCAGTGGTCAGTTCGTCGGGCCAGCAAC
CTTCATGACCTTCTGGCAGCCCTGGATGCATTCCTAGAGGAGGTGACAGTGCTTCCCCCAGGTCGGTGGG
ACCCAACAGCCCGGATTCCCCCGCCCAAATGTCTGCCATCTCAGCACAAAAGGCTTCCCTCGCAACAGCG
GGAGATCAGAGGTCCCGCCGTCCCGCGCCTGACCTCGGCTGAGGACAGGCACCGCCATGGGCCACACGCA
CACAGCCCGGAGTTGCAGCGGACCGGCAGGCTGTTTGGGGGCCTTATCCAGGACGTGCGCAGGAAGGTCC
CGTGGTACCCCAGCGATTTCTTGGACGCCCTGCATCTCCAGTGCTTCTCGGCCGTACTCTACATTTACCT
GGCCACTGTCACTAATGCCATCACTTTTGGGGGTCTGCTGGGAGATGCCACTGATGGTGCCCAGGGAGTG
CTGGAAAGTTTCCTGGGCACAGCAGTGGCTGGAGCTGCCTTCTGCCTGATGGCAGGCCAGCCCCTCACCA
TTCTGAGCAGCACGGGGCCAGTGCTGGTCTTTGAGCGCCTGCTCTTCTCTTTCAGCAGAGATTACAGCCT
GGACTACCTGCCCTTCCGCCTATGGGTGGGCATCTGGGTGGCTACCTTTTGCCTGGTGCTGGTGGCCACA
GAGGCCAGTGTGCTGGTGCGCTACTTCACCCGCTTCACTGAGGAAGGTTTCTGTGCCCTCATCAGCCTCA
TCTTCATCTACGATGCTGTGGGCAAAATGCTGAACTTGACCCATACCTATCCTATCCAGAAGCCTGGGTC
CTCTGCCTACGGGTGCCTCTGCCAATACCCAGGCCCAGGAGGAAATGAGTCTCAATGGATAAGGACAAGG
CCAAAAGACAGAGACGACATTGTAAGCATGGACTTAGGCCTGATCAATGCATCCTTGCTGCCGCCACCTG
AGTGCACCCGGCAGGGAGGCCACCCTCGTGGCCCTGGCTGTCATACAGTCCCAGACATTGCCTTCTTCTC
CCTTCTCCTCTTCCTTACTTCTTTCTTCTTTGCTATGGCCCTCAAGTGTGTAAAGACCAGCCGCTTCTTC
CCCTCTGTGGTGCGCAAAGGGCTCAGCGACTTCTCCTCAGTCCTGGCCATCCTGCTCGGCTGTGGCCTTG
ATGCTTTCCTGGGCCTAGCCACACCAAAGCTCATGGTACCCAGAGAGTTCAAGCCCACACTCCCTGGGCG
TGGCTGGCTGGTGTCACCTTTTGGAGCCAACCCCTGGTGGTGGAGTGTGGCAGCTGCCCTGCCTGCCCTG
CTGCTGTCTATCCTCATCTTCATGGACCAACAGATCACAGCAGTCATCCTCAACCGCATGGAATACAGAC
TGCAGAAGGGAGCTGGCTTCCACCTGGACCTCTTCTGTGTGGCTGTGCTGATGCTACTCACATCAGCGCT
TGGACTGCCTTGGTATGTCTCAGCCACTGTCATCTCCCTGGCTCACATGGACAGTCTTCGGAGAGAGAGC
AGAGCCTGTGCCCCCGGGGAGCGCCCCAACTTCCTGGGTATCAGGGAACAGAGGCTGACAGGCCTGGTGG
TGTTCATCCTTACAGGAGCCTCCATCTTCCTGGCACCTGTGCTCAAGTTCATTCCAATGCCTGTGCTCTA
TGGCATCTTCCTGTATATGGGGGTGGCAGCGCTCAGCAGCATTCAGTTCACTAATAGGGTGAAGCTGTTG
TTGATGCCAGCAAAACACCAGCCAGACCTGCTACTCTTGCGGCATGTGCCTCTGACCAGGGTCCACCTCT
TCACAGCCATCCAGCTTGCCTGTCTGGGGCTGCTTTGGATAATCAAGTCTACCCCTGCAGCCATCATCTT
CCCCCTCATGTTGCTGGGCCTTGTGGGGGTCCGAAAGGCCCTGGAGAGGGTCTTCTCACCACAGGAACTC
CTCTGGCTGGATGAGCTGATGCCAGAGGAGGAGAGAAGCATCCCTGAGAAGGGGCTGGAGCCAGAACACT
CATTCAGTGGAAGTGACAGTGAAGATTCAGAGCTGATGTATCAGCCAAAGGCTCCAGAAATCAACATTTC
TGTGAATTAG

Translation (959 aa):
MEMKLPGQEGFEASSAPRNIPSGELDSNPDPGTGPSPDGPSDTESKELGVPKDPLLFIQLNELLGWPQAL
EWRETGRWVLFEEKLEVAAGRWSAPHVPTLALPSLQKLRSLLAEGLVLLDCPAQSLLELVEQVTRVESLS
PELRGQLQALLLQRPQHYNQTTGTRPCWGSTHPRKASDNEEAPLREQCQNPLRQKLPPGAEAGTVLAGEL
GFLAQPLGAFVRLRNPVVLGSLTEVSLPSRFFCLLLGPCMLGKGYHEMGRAAAVLLSDPQFQWSVRRASN
LHDLLAALDAFLEEVTVLPPGRWDPTARIPPPKCLPSQHKRLPSQQREIRGPAVPRLTSAEDRHRHGPHA
HSPELQRTGRLFGGLIQDVRRKVPWYPSDFLDALHLQCFSAVLYIYLATVTNAITFGGLLGDATDGAQGV
LESFLGTAVAGAAFCLMAGQPLTILSSTGPVLVFERLLFSFSRDYSLDYLPFRLWVGIWVATFCLVLVAT
EASVLVRYFTRFTEEGFCALISLIFIYDAVGKMLNLTHTYPIQKPGSSAYGCLCQYPGPGGNESQWIRTR
PKDRDDIVSMDLGLINASLLPPPECTRQGGHPRGPGCHTVPDIAFFSLLLFLTSFFFAMALKCVKTSRFF
PSVVRKGLSDFSSVLAILLGCGLDAFLGLATPKLMVPREFKPTLPGRGWLVSPFGANPWWWSVAAALPAL
LLSILIFMDQQITAVILNRMEYRLQKGAGFHLDLFCVAVLMLLTSALGLPWYVSATVISLAHMDSLRRES
RACAPGERPNFLGIREQRLTGLVVFILTGASIFLAPVLKFIPMPVLYGIFLYMGVAALSSIQFTNRVKLL
LMPAKHQPDLLLLRHVPLTRVHLFTAIQLACLGLLWIIKSTPAAIIFPLMLLGLVGVRKALERVFSPQEL
LWLDELMPEEERSIPEKGLEPEHSFSGSDSEDSELMYQPKAPEINISVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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