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Report for CCDS75326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75326.1 Public Homo sapiens 5 PCDHA11 24 110 108 CCDS HistoryNCBI Gene:56138Re-query CCDS DB by CCDS ID:75326.1Re-query CCDS DB by GeneID:56138See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75326.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616325.1 ENSP00000482503.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616325.1Link to Ensembl Protein Viewer:ENSP00000482503.1Re-query CCDS DB by Nucleotide ID:ENST00000616325Re-query CCDS DB by Protein ID:ENSP00000482503
Original member Current member NCBI NM_031861.2 NP_114067.1 Accepted alive Link to Nucleotide Sequence:NM_031861.2Link to Protein Sequence:NP_114067.1Re-query CCDS DB by Nucleotide ID:NM_031861Re-query CCDS DB by Protein ID:NP_114067Link to BLAST:NP_114067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114067.1 810 Q9Y5I1-2 810 100% 0 0

Chromosomal Locations for CCDS 75326.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140869104 140871536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGTTTGGTTTTCAGAGAAGGGGATTGGGCACCCCACGACTACAGCTCTGGCTTCTCCTCCTCGAATTCT
GGGAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCTCGGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAACA
CATGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGG
AGCTGTGCGGGCAGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT
CCATGTGAACGTGGAGGTGAAGGACATTAACGACAACCCGCCGGTGTTCTCGCTCAGAGAACAAAAGCTG
CTGATTGCGGAATCTAAGCAATCGGACTCGCGTTTTCCACTAGAGGGAGCTTCTGATGCTGACATTGAAG
AGAATGCTCTATTGACCTACAGGCTAAGTAAAAATGAGTATTTTTCTTTAGATTCACCAACAAATGGTAA
GCAGATTAAAAGACTGTCACTTATTTTAAAGAAGTCTCTGGATAGAGAGAAAACTCCGGAACTTAATTTG
CTGCTAACAGCTACAGACGGGGGAAAACCAGAGCTTACTGGCACCGTTCGGCTGTTAGTCCAAGTCTTGG
ATGTCAACGACAATGATCCAGAGTTTGATAAATCAGAATATAAGGTGAGCCTTATGGAAAATGCTGCTAA
AGAAACTCTTGTGCTCAAACTAAACGCCACAGACCGAGACGAAGGAGTCAATGGAGAGGTAACATACTCC
TTAATGTCAATTAAGCCCAATGGAAGACACTTATTTACACTAGATCAAAATAATGGAGAAGTGAGGGTCA
ATGGAACTTTAGATTATGAAGAAAACAAGTTTTATAAAATTGAAGTACAGGCTACAGATAAGGGGACTCC
CCCAATGGCAGGTCACTGTACAGTCTGGGTGGAAATCTTGGACACCAACGATAACTCTCCTGAAGTCGCC
GTGACTTCCTTGTCCCTCCCAGTACGAGAGGACGCTCAGCCCAGCACGGTCATTGCCCTGATCAGCGTGT
CTGACCGTGACTCAGGTGTCAACGGACAGGTGACCTGCTCGCTGACGCCCCACGTTCCCTTCAAGCTGGT
GTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAACGTGTGGGCCTAT
GAACTGGTGGTGACTGCGCGGGATGGGGGTTCGCCTTCTCTGTGGGCCACGGCCAGGGTATCCGTGGAGG
TGGCCGACGTGAACGACAATGCGCCTGCGTTCGCACAGCCCGAGTACACCGTGTTCGTGAAGGAGAACAA
CCCACCAGGCTGCCACATCTTCACAGTGTCGGCGCGGGACGCGGACGCGCAGGAGAACGCGCTGGTGTCC
TACTCGCTGGTGGAGCGGCGGTTGGGCGACCGCGCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCG
GCAAGGTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCG
CGATGCGGGCGTGCCGCCTCTGAGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAAC
GCGCCGGCACTGCTGGCGACTCAGGCTGGCAGCGCGGGAGGCGCAGTTAACAAGCTAGTACCGCGGTCGG
TGGGTGCGGGCCACGTGGTGGCGAAGGTGCGCGCAGTGGATGCGGACTCAGGCTACAACGCGTGGCTTTC
ATATGAATTGCAGCCGGCGGCGGGCGGCTCGCGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATA
AGCACAACGCGTGCCCTGGACGAGGCAGACTCGCCGCGCCACCGACTTCTAGTACTGGTGAAGGATCACG
GTGAGCCGGCGCTGACGGCCACGGCCACCGTGCTGGTGTCGTTGGTGGAGAGCGGACAGGCGCCAAAGGC
CTCTTCCCGGACTTTGGCGGGCGCCGCGAGCCCAGAGGCTGCGCTGGTGGATGTCAACGTGTACCTGATC
ATCGCCATCTGCGTGGTGTCCAGCCTCCTGGTACTCACGCTGCTGCTGTATACGGCGCTGTGGTGGTCGG
CAACGCCCACTGAGGGCGCGTGCGCGCCGGGGAAGCCCACGCTGGTGTGCTCCCGCGCGGTGGGGAGCTG
GTCATACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCTGAGGAGGGCCCACCTAAGACGGACCTCATGGCC
TTCAGCCCCAGTCTTCCTCTAGGTCTGAATAAAGAGGAGGAAGGGGAAAGACAGGAGCCAGGGTCAAATC
ACCCCGGACAGGTGAGTTTTCTACAGATTCCACCTATCAGGAAGTGTATGTGA

Translation (810 aa):
MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLFRVASKT
HGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVKDINDNPPVFSLREQKL
LIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPTNGKQIKRLSLILKKSLDREKTPELNL
LLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYS
LMSIKPNGRHLFTLDQNNGEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVA
VTSLSLPVREDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVS
YSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLSSNVTLQVFVLDENDN
APALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGGSRIPFRVGLYTGEI
STTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLI
IAICVVSSLLVLTLLLYTALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMA
FSPSLPLGLNKEEEGERQEPGSNHPGQVSFLQIPPIRKCM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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