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Report for CCDS75340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75340.1 Public Homo sapiens 5 PCDHGB5 24 110 108 CCDS HistoryNCBI Gene:56101Re-query CCDS DB by CCDS ID:75340.1Re-query CCDS DB by GeneID:56101See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621169.1 ENSP00000484888.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621169.1Link to Ensembl Protein Viewer:ENSP00000484888.1Re-query CCDS DB by Nucleotide ID:ENST00000621169Re-query CCDS DB by Protein ID:ENSP00000484888
Original member Current member NCBI NM_032099.1 NP_115270.1 Accepted alive Link to Nucleotide Sequence:NM_032099.1Link to Protein Sequence:NP_115270.1Re-query CCDS DB by Nucleotide ID:NM_032099Re-query CCDS DB by Protein ID:NP_115270Link to BLAST:NP_115270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115270.1 818 Q9Y5G0-2 818 100% 0 0

Chromosomal Locations for CCDS 75340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141398128 141400584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2457 nt):
ATGGGGAGCGGCGCCGGGGAGCTGGGCCGGGCTGAGAGGCTGCCAGTGCTCTTTCTCTTCCTGCTGTCTT
TGTTCTGCCCGGCGCTCTGTGAGCAGATCCGCTACAGGATTCCCGAGGAAATGCCCAAGGGCTCCGTAGT
GGGGAACCTCGCCACGGACCTGGGGTTCAGCGTCCAGGAGTTACCGACTCGAAAACTGCGCGTCAGTTCG
GAGAAGCCTTACTTCACCGTGAGCGCAGAGAGCGGGGAGTTGCTTGTGAGCAGCAGGCTAGACAGGGAGG
AGATATGCGGGAAGAAGCCAGCTTGTGCTCTGGAATTTGAGGCTGTTGCTGAAAATCCACTGAACTTTTA
TCACGTGAATGTGGAGATCGAGGACATTAATGACCACACGCCAAAATTCACGCAAAATTCCTTTGAGCTG
CAAATAAGTGAGTCTGCACAGCCTGGCACAAGATTTATACTAGAAGTAGCAGAAGATGCAGATATTGGCT
TAAACTCTCTGCAGAAGTATAAACTCTCTCTTAACCCAAGTTTCTCATTAATAATTAAGGAGAAACAGGA
TGGTAGTAAATACCCGGAACTGGCACTGGAGAAAACCTTAGACCGGGAACAACAGAGTTACCATCGTTTA
GTCCTGACTGCCTTGGACGGTGGACATCCACCCCTAAGCGGCACCACTGAGCTCCGGATCCAGGTAACCG
ACGCCAATGATAATCCCCCGGTATTCAACCGAGACGTGTACAGAGTCAGCCTTCGGGAAAACGTGCCACC
AGGCACCACTGTGTTGCAAGTGTCAGCCACTGACCAAGACGAGGGCATCAACTCAGAAATTACTTATTCC
TTCTACAGAACCGGGCAAATCTTTAGTCTGAATTCAAAGAGCGGAGAAATTACCACTCAAAAGAAACTGG
ATTTTGAAGAGACCAAGGAATATTCAATGGTTGTAGAAGGGAGGGATGGTGGTGGACTGGTTGCACAATG
TACAGTTGAAATTAATATTCAAGATGAAAATGACAATAGCCCAGAAGTTACATTCCATTCTCTACTTGAA
ATGATTCTGGAAAACGCGGTGCCTGGAACACTAATTGCTTTGATCAAAATACATGACCAAGATTCTGGGG
AAAATGGGGAGGTTAATTGTCAATTACAAGGCGAAGTCCCTTTTAAGATTATCTCTTCATCCAAAAATTC
GTATAAGTTGGTAACAGATGGAACCCTAGACCGAGAGCAAACCCCGGAGTACAATGTCACCATCACAGCC
ACAGACAGGGGCAAGCCGCCCCTCTCCTCCAGCATAAGCGTCATCCTACATATCAGAGACGTCAACGATA
ACGCTCCGGTTTTCCACCAGGCGTCCTACTTAGTCAGTGTACCCGAAAACAACCCTCCTGGGGCCTCCAT
CGCGCAAGTCTGCGCCTCGGACCTGGACTTGGGGTTGAACGGCCAAGTCTCCTACTCTATCATGGCCAGC
GACCTAGAGCCTCTGGCACTGGCCTCTTACGTGTCCATGAGCGCGCAAAGTGGGGTGGTGTTCGCGCAGC
GCGCCTTTGACTACGAGCAGCTGCGCACCTTCGAACTCACACTACAGGCCCGCGACCAGGGCTCGCCTGC
GCTCAGCGCAAACGTGAGCCTGCGCGTGTTGGTGGGCGACCGAAACGACAACGCACCGCGGGTGCTGTAC
CCCGCGCTGGGTCCCGACGGCTCTGCGCTCTTCGATATGGTGCCGCGCGCTGCAGAGCCCGGCTACCTGG
TGACCAAGGTAGTGGCCGTGGACGCAGACTCAGGACACAACGCCTGGCTGTCCTACCACGTGCTGCAGGC
TAGCGAGCCCGGGCTCTTCAGCCTGGGGCTGCGCACAGGAGAGGTGCGCACAGCGCGTGCCTTGGGCGAC
AGGGACGCGGCCCGCCAGCGCCTGCTGGTTGCTGTGCGTGATGGTGGACAGCCGCCACTCTCCGCCACCG
CCACGCTGCACTTGGTCTTTGCTGACAGCTTGCAGGAGGTGCTGCCGGATATCACTGACCGCCCTGTACC
CTCTGACCCCCAGGCTGAGCTGCAGTTTTACCTAGTGGTGGCCTTGGCCTTGATCTCAGTGCTCTTCCTC
CTGGCCGTGATTCTGGCCGTTGCCTTGCGCCTGCGACGCTCCTCCAGCCCTGCCGCCTGGAGCTGCTTCC
AACCTGGTCTCTGTGTCAAGTCTGGACCTGTGGTTCCCCCCAACTACAGTCAGGGGACTTTGCCTTATTC
CTACAACCTATGTGTTGCACATACAGGAAAGACGGAGTTTAATTTCCTAAAATGTAGTGAGCAATTGAGT
TCAGGACAAGACATACTTTGTGGTGATTCATCTGGGGCCTTATTTCCACTTTGTAATTCCAGCGAGTCGA
CTTCCCATCCTGAGTTGGTGAGTTTCATTTATGTCTATTCTTTTTCATTACCCACCCAATTTTCTGTATT
TACATGA

Translation (818 aa):
MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSS
EKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFEL
QISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQSYHRL
VLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYS
FYRTGQIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLE
MILENAVPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITA
TDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMAS
DLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVLY
PALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTARALGD
RDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFL
LAVILAVALRLRRSSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLS
SGQDILCGDSSGALFPLCNSSESTSHPELVSFIYVYSFSLPTQFSVFT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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