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Report for CCDS75343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75343.1 Public Homo sapiens 5 PCDHGA10 24 110 108 CCDS HistoryNCBI Gene:56106Re-query CCDS DB by CCDS ID:75343.1Re-query CCDS DB by GeneID:56106See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612503.1 ENSP00000481157.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612503.1Link to Ensembl Protein Viewer:ENSP00000481157.1Re-query CCDS DB by Nucleotide ID:ENST00000612503Re-query CCDS DB by Protein ID:ENSP00000481157
Original member Current member NCBI NM_032090.2 NP_114479.1 Accepted alive Link to Nucleotide Sequence:NM_032090.2Link to Protein Sequence:NP_114479.1Re-query CCDS DB by Nucleotide ID:NM_032090Re-query CCDS DB by Protein ID:NP_114479Link to BLAST:NP_114479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114479.1 850 Q9Y5H3-2 850 100% 0 0

Chromosomal Locations for CCDS 75343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141413176 141415728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2553 nt):
ATGGCCGCTCAAAGGAATCGCTCAAAGGAATCAAAGGATTGCAGCGGGCTGGTCCTGCTCTGCCTTTTCT
TCGGGATTCCATGGGAGGCTGGAGCCCGGCAGATCTCCTACTCAATTCCTGAGGAATTAGAGAAAGGCTC
TTTCGTGGGCAACATCTCCAAGGACTTGGGTCTGGCGCCCCGGGAGCTGGCGGAGCGCGGAGTCCGCATA
GTCTCCAGAGGTAGGACGCAGCTTTTCTCTCTGAACCCGCGCAGCGGCAGCTTGATCACCGCGGGCAGGA
TAGACCGGGAGGAGCTCTGCGCTCAGAGCGCGCGGTGCGTGGTGAGTTTTAATATCCTTGTGGAAGACAG
GGTGAAACTTTTTGGGATAGAAATAGAAGTAACTGATATCAATGACAATGCTCCAAAATTCCAAGCAGAA
AATCTAGACGTAAAAATTAATGAAAATGTCGCTGCGGGAATGCGTTTTCCTCTCCCGGAAGCTATTGATC
CGGATGTGGGCGTGAACTCCCTGCAGAGCTATCAGCTCAGCCCCAATAAGCACTTCTCCCTAAGAGTTCA
GAGCCGTGCCAATGGCGTCAAGTACCCGGAGCTGGTACTGGAGCACTCCCTAGATCGCGAGGAAGAGGCC
ATTCACCACCTGGTCCTCACCGCCTCCGACGGGGGTGACCCTCTCCGATCTGGCACTGTCCTTGTCAGTG
TGACTGTCTTCGATGCAAATGACAACGCGCCGGTCTTCACCTTGCCAGAATACCGAGTGAGTGTTCCTGA
GAATTTGCCTGTGGGCACTCAGCTGCTGACAGTCACAGCCACCGACAGGGACGAAGGTGCCAATGGAGAA
GTGACATATTCATTCCGAAAATTACCTGACACGCAATTGTTGAAGTTCCAACTAAACAAATATACTGGAG
AAATAAAAATATCAGAAAATCTAGATTATGAAGAAACCGGTTTCTATGAAATAGAAATACAAGCAGAAGA
TGGAGGAGCATATCTTGCAACTGCAAAAGTGTTGATTACAGTAGAAGATGTAAATGACAACAGTCCAGAG
CTGACCATCACGTCTCTATTTAGTCCAGTGACTGAAGATTCACCTCTGGGAACAGTCGTAGCCCTTTTAA
ATGTGCATGATTTAGACTCTGAGCAGAATGGACAGGTAACCTGTTCCATTTTGGCGTATCTACCATTTAA
ATTAGAAAAGTCCATTGACAGTTATTACAGATTGGTGATACACAGAGCCCTTGACAGGGAACAGGTATCC
TCTTACAATATCACAGTGACAGCCACAGATGGGGGAAGTCCTCCTCTATCAACGGAAGCTCACTTTATGC
TACAAGTGGCAGATATCAATGACAACCCACCTACCTTCTCTCAAGTCTCCTACTTTACCTATATCCCAGA
GAACAACGCCAGGGGTGCCTCCATCTTCTCAGTGACAGCGCTGGACCCGGACAGCAAAGAGAATGCCCAG
ATTATTTACTCCCTGGCTGAAGACACCATCCAGGGGGTACCTCTGTCCTCATACATATCCATCAACTCAG
ACACTGGCGTCCTGTATGCACTCAGATCCTTCGACTATGAGCAGTTTCATGAGCTACAGATGCAGGTGAC
AGCCAGCGACAGCGGGGATCCTCCACTCAGCAGCAACGTGTCGTTGAGCCTGTTTGTGCTGGACCAGAAC
GACAATGCGCCCGAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACAGGCGTGGAGCTGGCGCCCC
GCTCCGCAGAGCCCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCCGGCCAGAACGCCTG
GCTGTCCTACCGTCTGCTCAAGGCCAGCGAGCCGGGACTCTTCGCGGTGGGGGAGCACACGGGCGAGGTG
CGCACGGCGCGAGCCCTGCTGGACAGAGACGCGCTCAAGCAAAGCCTCGTAGTGGCCGTCCAGGACCACG
GCCAGCCCCCTCTCTCCGCCACTGTCACGCTCACCGTGGCCGTGGCCGACAGCATCCCCCAAGTCCTGGC
GGACCTCGGCAGCTTCGAGTCTCCAGCTAACTCTGAAACCTCAGACCTCACTCTGTACCTGGTGGTAGCG
GTGGCCGCGGTCTCCTGCGTCTTCCTGGCCTTCGTCATCGTGCTGCTGGCGCACAGGCTGCGGCGCTGGC
ACAAGTCACGCCTGCTGCAGGCTTCAGGAGGCGGCTTGACAGGTGTGTCCGGCTCGCACTTTGTGGGCGT
GGACGGGGTTCGGGCTTTCCTGCAGACCTATTCCCACGAGGTCTCTCTCACCGCGGACTCGCGAAAGAGT
CACCTGATCTTCCCCCAGCCCAATTATGCGGACACGCTCATCAGCCAGGAGAGCTGTGAGAAAAACGATC
CTTTGTCTTTGTTAGATGATTCGAAGTTTCCTATAGAGGATACCCCATTGGTTCCAGTGAGTTTTATTTT
CATTTTTACTTTTGTTAAAAAAAAAAAGATTGGTTTTTACTTTGAAGTTTGCGGCATGATGGTGGAAAGT
GTAAATGCTAAAACACTGATGAGTAGAATTTGA

Translation (850 aa):
MAAQRNRSKESKDCSGLVLLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRI
VSRGRTQLFSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQAE
NLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPELVLEHSLDREEEA
IHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRDEGANGE
VTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPE
LTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVS
SYNITVTATDGGSPPLSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQ
IIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQN
DNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEV
RTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSFESPANSETSDLTLYLVVA
VAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLTGVSGSHFVGVDGVRAFLQTYSHEVSLTADSRKS
HLIFPQPNYADTLISQESCEKNDPLSLLDDSKFPIEDTPLVPVSFIFIFTFVKKKKIGFYFEVCGMMVES
VNAKTLMSRI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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