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Report for CCDS4311.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4311.2 Public Homo sapiens 5 ZNF300 24 110 108 CCDS HistoryNCBI Gene:91975Re-query CCDS DB by CCDS ID:4311.2Re-query CCDS DB by GeneID:91975See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4311.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274599.10 ENSP00000274599.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274599.10Link to Ensembl Protein Viewer:ENSP00000274599.5Re-query CCDS DB by Nucleotide ID:ENST00000274599Re-query CCDS DB by Protein ID:ENSP00000274599
Original member Current member NCBI NM_052860.4 NP_443092.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052860.4Link to Protein Sequence:NP_443092.1Re-query CCDS DB by Nucleotide ID:NM_052860Re-query CCDS DB by Protein ID:NP_443092Link to BLAST:NP_443092.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443092.1 604 Q96RE9-1 604 100% 0 0

Chromosomal Locations for CCDS 4311.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150895424 150896973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150898062 150898184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150898428 150898554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150903141 150903155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGATGAAGTCCCAGGGGTTAGTATCATTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGC
AACTTGACCCTTCTCAGAGGACCCTGTACAGGGATGTGATGCTGGAGAACTACAGCCACCTGGTCTCAAT
GGGGTATCCAGTTTCCAAACCAGATGTCATCTCCAAGTTGGAACAAGGAGAAGAGCCATGGATCATAAAG
GGAGACATATCAAATTGGATCTATCCAGATGAATATCAGGCAGATGGGAGACAAGACAGGAAGAGTAACC
TTCACAACTCCCAGTCATGTATTTTGGGGACAGTTTCCTTCCATCATAAGATACTGAAAGGAGTCACAAG
GGATGGTTCATTGTGCTCCATTTTAAAAGTCTGTCAAGGTGATGGTCAGCTGCAGAGATTTCTAGAGAAT
CAAGACAAACTCTTCAGGCAGGTCACATTTGTTAACAGCAAAACAGTGACTGAGGCATCAGGGCATAAAT
ATAATCCACTGGGGAAAATATTTCAAGAGTGCATAGAAACAGATATATCAATACAGAGATTCCATAAATA
TGATGCTTTTAAAAAGAACTTAAAACCAAATATTGACCTACCGAGTTGTTATAAGAGCAATTCAAGAAAA
AAACCTGATCAGAGTTTTGGAGGTGGAAAATCATCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAAGA
TTCACAATGGAGTAATACCTTTTGATGATAATCAGTGTGGAAACGTTTTTAGAAATACACAATCCCTTAT
TCAATATCAGAATGTGGAAACTAAAGAGAAAAGCTGTGTATGTGTTACATGTGGAAAAGCCTTTGCTAAG
AAGTCACAACTCATTGTACATCAAAGAATTCATACTGGAAAGAAACCATATGATTGTGGTGCATGCGGAA
AAGCCTTCAGTGAGAAGTTTCATCTTGTTGTACATCAGAGAACTCATACTGGGGAGAAACCTTATGATTG
TTCTGAATGTGGAAAAGCCTTCTCTCAGAAATCGTCCCTTATTATACATCAGAGAGTTCACACTGGGGAA
AAACCCTATGAATGTAGTGAATGCGGGAAAGCCTTCTCCCAGAAATCACCCCTCATTATACATCAGAGAA
TACATACTGGGGAAAAACCCTATGAATGTAGAGAGTGTGGGAAGGCCTTTTCCCAGAAGTCACAGCTGAT
TATACACCACAGAGCTCATACTGGAGAGAAGCCGTATGAGTGTACCGAATGTGGGAAAGCCTTCTGTGAG
AAGTCCCACCTCATTATACATAAAAGAATTCACACTGGTGAGAAACCCTACAAATGTGCTCAATGTGAGG
AAGCCTTCAGCAGGAAGACAGAACTCATTACACATCAGTTAGTTCATACTGGGGAAAAACCTTATGAATG
TACTGAATGTGGAAAGACATTCTCCCGCAAGTCACAGCTCATCATACATCAGAGAACACATACTGGAGAA
AAACCCTATAAATGTAGTGAATGTGGCAAAGCCTTCTGCCAGAAGTCACATCTCATTGGACATCAGAGAA
TTCACACAGGAGAAAAACCTTATATATGTACTGAATGTGGGAAAGCCTTCTCTCAGAAGTCCCACCTTCC
GGGACACCAGCGAATTCATACAGGAGAGAAACCTTACATATGTGCTGAATGTGGAAAGGCCTTTTCTCAG
AAGTCAGACCTTGTTTTACATCAGAGGATTCATACTGGGGAAAGACCCTATCAATGTGCTATATGTGGGA
AGGCCTTCATCCAGAAGTCACAACTAACTGTACACCAGAGAATTCACACAGTGGTAAAATCATAA

Translation (604 aa):
MMKSQGLVSFKDVAVDFTQEEWQQLDPSQRTLYRDVMLENYSHLVSMGYPVSKPDVISKLEQGEEPWIIK
GDISNWIYPDEYQADGRQDRKSNLHNSQSCILGTVSFHHKILKGVTRDGSLCSILKVCQGDGQLQRFLEN
QDKLFRQVTFVNSKTVTEASGHKYNPLGKIFQECIETDISIQRFHKYDAFKKNLKPNIDLPSCYKSNSRK
KPDQSFGGGKSSSQSEPNSNLEKIHNGVIPFDDNQCGNVFRNTQSLIQYQNVETKEKSCVCVTCGKAFAK
KSQLIVHQRIHTGKKPYDCGACGKAFSEKFHLVVHQRTHTGEKPYDCSECGKAFSQKSSLIIHQRVHTGE
KPYECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCE
KSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQRTHTGE
KPYKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQRIHTGEKPYICAECGKAFSQ
KSDLVLHQRIHTGERPYQCAICGKAFIQKSQLTVHQRIHTVVKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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