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Report for CCDS4466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4466.1 Public Homo sapiens 5 TRIM41 24 110 108 CCDS HistoryNCBI Gene:90933Re-query CCDS DB by CCDS ID:4466.1Re-query CCDS DB by GeneID:90933See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4466.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315073.10 ENSP00000320869.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315073.10Link to Ensembl Protein Viewer:ENSP00000320869.5Re-query CCDS DB by Nucleotide ID:ENST00000315073Re-query CCDS DB by Protein ID:ENSP00000320869
Original member Current member NCBI NM_033549.5 NP_291027.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033549.5Link to Protein Sequence:NP_291027.3Re-query CCDS DB by Nucleotide ID:NM_033549Re-query CCDS DB by Protein ID:NP_291027Link to BLAST:NP_291027.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291027.3 630 Q8WV44-1 630 100% 0 0

Chromosomal Locations for CCDS 4466.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 181224000 181224812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181230744 181230839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181232659 181232889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181233413 181233435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181233636 181233763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181234174 181234775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGCTGCCGTTGCCATGACACCCAACCCTGTGCAGACCCTTCAGGAGGAGGCGGTGTGCGCCATCTGCC
TCGATTACTTCACGGACCCCGTGTCCATCGGCTGCGGGCACAACTTCTGCCGAGTTTGTGTAACCCAGTT
GTGGGGTGGGGAGGATGAGGAGGACAGAGATGAGTTAGATCGGGAGGAGGAGGAGGAGGACGGAGAGGAG
GAGGAAGTGGAGGCTGTGGGGGCTGGCGCGGGGTGGGACACCCCCATGCGGGATGAAGACTACGAGGGTG
ACATGGAGGAGGAGGTCGAGGAGGAAGAAGAGGGTGTGTTCTGGACCAGTGGCATGAGCAGGTCCAGCTG
GGACAACATGGACTATGTGTGGGAGGAGGAGGACGAGGAGGAAGACCTGGACTACTACTTGGGGGACATG
GAGGAGGAGGACCTGAGGGGGGAGGATGAGGAGGACGAGGAGGAAGTGCTGGAGGAGGTTGAGGAAGAGG
ATCTAGACCCCGTCACCCCACTGCCCCCGCCTCCAGCCCCTCGGAGGTGCTTCACATGCCCTCAGTGCCG
AAAGAGCTTTCCTCGGCGGAGCTTCCGCCCCAACCTGCAGCTGGCCAATATGGTCCAGGTGATTCGGCAG
ATGCACCCAACCCCTGGTCGAGGGAGCCGCGTGACCGATCAGGGCATCTGTCCCAAACACCAAGAAGCCC
TGAAGCTCTTCTGCGAGGTAGACGAAGAGGCCATCTGTGTGGTGTGCCGAGAATCCAGGAGCCACAAACA
GCACAGCGTGGTGCCATTGGAGGAGGTGGTGCAGGAGTACAAGGCCAAACTGCAGGGGCACGTGGAACCA
CTGAGGAAGCACCTGGAGGCAGTGCAGAAGATGAAAGCCAAGGAGGAGAGGCGAGTGACAGAACTGAAGA
GCCAGATGAAGTCAGAGCTGGCAGCGGTGGCCTCGGAGTTTGGGCGACTGACACGGTTTCTGGCTGAAGA
GCAGGCAGGGCTGGAACGGCGTCTCAGAGAGATGCATGAAGCCCAGCTGGGGCGTGCGGGAGCCGCGGCT
AGTCGCCTTGCAGAACAGGCCGCCCAGCTCAGCCGCCTGCTGGCAGAGGCCCAGGAGCGGAGCCAGCAGG
GGGGTCTCCGGCTGCTCCAGGACATCAAGGAGACTTTCAATAGGTGTGAAGAGGTACAGCTGCAGCCCCC
AGAGGTCTGGTCCCCTGACCCGTGCCAACCCCATAGCCATGACTTCCTGACAGATGCCATCGTGAGGAAA
ATGAGCCGGATGTTCTGTCAGGCTGCGAGAGTGGACCTGACGCTGGACCCTGACACGGCTCACCCGGCCC
TGATGCTGTCCCCTGACCGCCGGGGGGTCCGCCTGGCAGAGCGGCGGCAGGAGGTTGCTGACCATCCCAA
GCGCTTCTCGGCCGACTGCTGCGTACTGGGGGCCCAGGGCTTCCGCTCCGGCCGGCACTACTGGGAGGTA
GAGGTGGGCGGGCGGCGGGGCTGGGCGGTGGGTGCTGCCCGTGAATCAACCCATCATAAGGAAAAGGTGG
GCCCTGGGGGTTCCTCCGTGGGCAGCGGGGATGCCAGCTCCTCGCGCCATCACCATCGCCGCCGCCGGCT
CCACCTGCCCCAGCAGCCCCTGCTCCAGCGGGAAGTGTGGTGCGTGGGCACCAACGGCAAACGCTATCAG
GCCCAGAGCTCCACAGAACAGACGCTGCTGAGCCCCAGTGAGAAACCAAGGCGCTTTGGTGTGTACCTGG
ACTATGAAGCTGGGCGCCTGGGCTTCTACAACGCAGAGACTCTAGCCCACGTGCACACCTTCTCGGCTGC
CTTCCTGGGCGAGCGTGTCTTTCCTTTCTTCCGGGTGCTCTCCAAGGGCACCCGCATCAAGCTCTGCCCT
TGA

Translation (630 aa):
MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELDREEEEEDGEE
EEVEAVGAGAGWDTPMRDEDYEGDMEEEVEEEEEGVFWTSGMSRSSWDNMDYVWEEEDEEEDLDYYLGDM
EEEDLRGEDEEDEEEVLEEVEEEDLDPVTPLPPPPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQ
MHPTPGRGSRVTDQGICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEP
LRKHLEAVQKMKAKEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAA
SRLAEQAAQLSRLLAEAQERSQQGGLRLLQDIKETFNRCEEVQLQPPEVWSPDPCQPHSHDFLTDAIVRK
MSRMFCQAARVDLTLDPDTAHPALMLSPDRRGVRLAERRQEVADHPKRFSADCCVLGAQGFRSGRHYWEV
EVGGRRGWAVGAARESTHHKEKVGPGGSSVGSGDASSSRHHHRRRRLHLPQQPLLQREVWCVGTNGKRYQ
AQSSTEQTLLSPSEKPRRFGVYLDYEAGRLGFYNAETLAHVHTFSAAFLGERVFPFFRVLSKGTRIKLCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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