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Report for CCDS87367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87367.1 Public Homo sapiens 6 ATXN1 24 110 108 CCDS HistoryNCBI Gene:6310Re-query CCDS DB by CCDS ID:87367.1Re-query CCDS DB by GeneID:6310See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 87367.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000642969.1 ENSP00000493530.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642969.1Link to Ensembl Protein Viewer:ENSP00000493530.1Re-query CCDS DB by Nucleotide ID:ENST00000642969Re-query CCDS DB by Protein ID:ENSP00000493530
Original member Current member NCBI NM_001357857.2 NP_001344786.1 Accepted alive Link to Nucleotide Sequence:NM_001357857.2Link to Protein Sequence:NP_001344786.1Re-query CCDS DB by Nucleotide ID:NM_001357857Re-query CCDS DB by Protein ID:NP_001344786Link to BLAST:NP_001344786.1

Chromosomal Locations for CCDS 87367.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 16327724 16328281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGCCTGCCTCCCAAGAAGCGCGAGATCCCCGCCACCAGCCGGTCCTCCGAGGAGAAGGCCCCTACCCTG
CCCAGCGACAACCACCGGGTGGAGGGCACAGCATGGCTCCCGGGCAACCCTGGTGGCCGGGGCCACGGGG
GCGGGAGGCATGGGCCGGCAGGGACCTCGGTGGAGCTTGGTTTACAACAGGGAATAGGTTTACACAAAGC
ATTGTCCACAGGGCTGGACTACTCCCCGCCCAGCGCTCCCAGGTCTGTCCCCGTGGCCACCACGCTGCCT
GCCGCGTACGCCACCCCGCAGCCAGGGACCCCGGTGTCCCCCGTGCAGTACGCTCACCTGCCGCACACCT
TCCAGTTCATTGGGTCCTCCCAATACAGTGGAACCTATGCCAGCTTCATCCCATCACAGCTGATCCCCCC
AACCGCCAACCCCGTCACCAGTGCAGTGGCCTCGGCCGCAGGGGCCACCACTCCATCCCAGCGCTCCCAG
CTGGAGGCCTATTCCACTCTGCTGGCCAACATGGGCAGTCTGAGCCAGACGCCGGGACACAAGGCTGA

Translation (185 aa):
MPASQEARDPRHQPVLRGEGPYPAQRQPPGGGHSMAPGQPWWPGPRGREAWAGRDLGGAWFTTGNRFTQS
IVHRAGLLPAQRSQVCPRGHHAACRVRHPAARDPGVPRAVRSPAAHLPVHWVLPIQWNLCQLHPITADPP
NRQPRHQCSGLGRRGHHSIPALPAGGLFHSAGQHGQSEPDAGTQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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