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Report for CCDS93952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93952.1 Public Homo sapiens 6 HMGN3 24 110 108 CCDS HistoryNCBI Gene:9324Re-query CCDS DB by CCDS ID:93952.1Re-query CCDS DB by GeneID:9324See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93952.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000703810.1 ENSP00000515488.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703810.1Link to Ensembl Protein Viewer:ENSP00000515488.1Re-query CCDS DB by Nucleotide ID:ENST00000703810Re-query CCDS DB by Protein ID:ENSP00000515488
Original member Current member NCBI NM_001318886.2 NP_001305815.1 Accepted alive Link to Nucleotide Sequence:NM_001318886.2Link to Protein Sequence:NP_001305815.1Re-query CCDS DB by Nucleotide ID:NM_001318886Re-query CCDS DB by Protein ID:NP_001305815Link to BLAST:NP_001305815.1

Chromosomal Locations for CCDS 93952.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 79201688 79201726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79202069 79202155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79202276 79202389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79203580 79203630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79208547 79208576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79214972 79215022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 79234546 79234560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGCCGAAGAGAAAGTCTCCAGAGAATACAGAGGGCAAAGATGGATCCAAAGTAACTAAACAGGAGCCCA
CAAGACGGTCTGCCAGATTGTCAGCGAAACCTGCTCCACCAAAACCTGAACCCAAACCAAGAAAAACATC
TGCTAAGAAAGAACCTGGAGCAAAGATTAGCAGAGGTGCTAAAGGGAAGAAGGAGGAAAAGCAGGAAGCT
GGAAAGGAAGGTACTGCACCATCTGAAAATGGTGAAACTAAAGCTGAAGAGATCCACATCTCTCGCTCAA
CTGTTAATGTCTCAACCTCCAGAGGCACCCCACCCAGCACACTGTCAGTAAAGGGGCAGATTGAAACAGC
ACAGAAAACTGAATCTGTAGATAACGAGGGAGAATGA

Translation (128 aa):
MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGAKGKKEEKQEA
GKEGTAPSENGETKAEEIHISRSTVNVSTSRGTPPSTLSVKGQIETAQKTESVDNEGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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