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Report for CCDS34496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34496.1 Public Homo sapiens 6 SMIM8 24 110 108 CCDS HistoryNCBI Gene:57150Re-query CCDS DB by CCDS ID:34496.1Re-query CCDS DB by GeneID:57150See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229570.9 ENSP00000229570.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000229570.9Link to Ensembl Protein Viewer:ENSP00000229570.5Re-query CCDS DB by Nucleotide ID:ENST00000229570Re-query CCDS DB by Protein ID:ENSP00000229570
Original member Current member EBI ENST00000392863.6 ENSP00000376603.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392863.6Link to Ensembl Protein Viewer:ENSP00000376603.1Re-query CCDS DB by Nucleotide ID:ENST00000392863Re-query CCDS DB by Protein ID:ENSP00000376603
Original member Current member EBI ENST00000608868.2 ENSP00000476945.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000608868.2Link to Ensembl Protein Viewer:ENSP00000476945.1Re-query CCDS DB by Nucleotide ID:ENST00000608868Re-query CCDS DB by Protein ID:ENSP00000476945
Original member Current member EBI ENST00000608353.5 ENSP00000477133.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000608353.5Link to Ensembl Protein Viewer:ENSP00000477133.1Re-query CCDS DB by Nucleotide ID:ENST00000608353Re-query CCDS DB by Protein ID:ENSP00000477133
Original member Current member NCBI NM_001042493.3 NP_001035958.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042493.3Link to Protein Sequence:NP_001035958.1Re-query CCDS DB by Nucleotide ID:NM_001042493Re-query CCDS DB by Protein ID:NP_001035958Link to BLAST:NP_001035958.1
Original member Current member NCBI NM_020425.6 NP_065158.3 Accepted alive Link to Nucleotide Sequence:NM_020425.6Link to Protein Sequence:NP_065158.3Re-query CCDS DB by Nucleotide ID:NM_020425Re-query CCDS DB by Protein ID:NP_065158Link to BLAST:NP_065158.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035958.1 97 Q96KF7 97 100% 0 0
NP_065158.3 97 Q96KF7 97 100% 0 0

Chromosomal Locations for CCDS 34496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87337032 87337166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87340116 87340274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGTCTTCAGCACCTGAGCCTCCAACATTCAAAAAGGAACCACCCAAAGAGAAAGAGTTTCAAAGCCCAG
GGCTCAGAGGGGTGCGCACAACAACCTTATTTCGTGCTGTGAATCCAGAGCTCTTCATTAAACCTAACAA
ACCTGTAATGGCTTTCGGATTGGTAACTCTTTCACTTTGCGTGGCATATATTGGTTATCTACATGCAATA
CAAGAGAATAAAAAGGACCTCTATGAAGCTATTGATAGTGAGGGGCACAGTTATATGAGGCGGAAAACAT
CCAAATGGGATTAG

Translation (97 aa):
MSSAPEPPTFKKEPPKEKEFQSPGLRGVRTTTLFRAVNPELFIKPNKPVMAFGLVTLSLCVAYIGYLHAI
QENKKDLYEAIDSEGHSYMRRKTSKWD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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