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Report for CCDS5510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5510.1 Public Homo sapiens 7 FIGNL1 24 110 108 CCDS HistoryNCBI Gene:63979Re-query CCDS DB by CCDS ID:5510.1Re-query CCDS DB by GeneID:63979See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5510.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356889.8 ENSP00000349356.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356889.8Link to Ensembl Protein Viewer:ENSP00000349356.4Re-query CCDS DB by Nucleotide ID:ENST00000356889Re-query CCDS DB by Protein ID:ENSP00000349356
Original member Current member EBI ENST00000395556.6 ENSP00000378924.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395556.6Link to Ensembl Protein Viewer:ENSP00000378924.2Re-query CCDS DB by Nucleotide ID:ENST00000395556Re-query CCDS DB by Protein ID:ENSP00000378924
Original member Current member EBI ENST00000433017.6 ENSP00000399997.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000433017.6Link to Ensembl Protein Viewer:ENSP00000399997.1Re-query CCDS DB by Nucleotide ID:ENST00000433017Re-query CCDS DB by Protein ID:ENSP00000399997
Original member Current member EBI ENST00000419119.1 ENSP00000410811.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419119.1Link to Ensembl Protein Viewer:ENSP00000410811.1Re-query CCDS DB by Nucleotide ID:ENST00000419119Re-query CCDS DB by Protein ID:ENSP00000410811
Original member Current member EBI ENST00000613602.3 ENSP00000481751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613602.3Link to Ensembl Protein Viewer:ENSP00000481751.1Re-query CCDS DB by Nucleotide ID:ENST00000613602Re-query CCDS DB by Protein ID:ENSP00000481751
Original member Current member EBI ENST00000617389.4 ENSP00000483126.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617389.4Link to Ensembl Protein Viewer:ENSP00000483126.1Re-query CCDS DB by Nucleotide ID:ENST00000617389Re-query CCDS DB by Protein ID:ENSP00000483126
Original member Current member EBI ENST00000615084.4 ENSP00000483543.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615084.4Link to Ensembl Protein Viewer:ENSP00000483543.1Re-query CCDS DB by Nucleotide ID:ENST00000615084Re-query CCDS DB by Protein ID:ENSP00000483543
Original member Current member EBI ENST00000611938.4 ENSP00000484551.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611938.4Link to Ensembl Protein Viewer:ENSP00000484551.1Re-query CCDS DB by Nucleotide ID:ENST00000611938Re-query CCDS DB by Protein ID:ENSP00000484551
Original member Current member NCBI NM_001042762.5 NP_001036227.1 Accepted alive Link to Nucleotide Sequence:NM_001042762.5Link to Protein Sequence:NP_001036227.1Re-query CCDS DB by Nucleotide ID:NM_001042762Re-query CCDS DB by Protein ID:NP_001036227Link to BLAST:NP_001036227.1
Original member Current member NCBI NM_001287492.4 NP_001274421.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001287492.4Link to Protein Sequence:NP_001274421.1Re-query CCDS DB by Nucleotide ID:NM_001287492Re-query CCDS DB by Protein ID:NP_001274421Link to BLAST:NP_001274421.1
Original member Current member NCBI NM_001287493.3 NP_001274422.1 Accepted alive Link to Nucleotide Sequence:NM_001287493.3Link to Protein Sequence:NP_001274422.1Re-query CCDS DB by Nucleotide ID:NM_001287493Re-query CCDS DB by Protein ID:NP_001274422Link to BLAST:NP_001274422.1
Original member Current member NCBI NM_001287494.4 NP_001274423.1 Accepted alive Link to Nucleotide Sequence:NM_001287494.4Link to Protein Sequence:NP_001274423.1Re-query CCDS DB by Nucleotide ID:NM_001287494Re-query CCDS DB by Protein ID:NP_001274423Link to BLAST:NP_001274423.1
Original member Current member NCBI NM_001287495.3 NP_001274424.1 Accepted alive Link to Nucleotide Sequence:NM_001287495.3Link to Protein Sequence:NP_001274424.1Re-query CCDS DB by Nucleotide ID:NM_001287495Re-query CCDS DB by Protein ID:NP_001274424Link to BLAST:NP_001274424.1
Original member Current member NCBI NM_001346560.3 NP_001333489.1 Accepted alive Link to Nucleotide Sequence:NM_001346560.3Link to Protein Sequence:NP_001333489.1Re-query CCDS DB by Nucleotide ID:NM_001346560Re-query CCDS DB by Protein ID:NP_001333489Link to BLAST:NP_001333489.1
Original member Current member NCBI NM_001346561.3 NP_001333490.1 Accepted alive Link to Nucleotide Sequence:NM_001346561.3Link to Protein Sequence:NP_001333490.1Re-query CCDS DB by Nucleotide ID:NM_001346561Re-query CCDS DB by Protein ID:NP_001333490Link to BLAST:NP_001333490.1
Original member Current member NCBI NM_001346562.3 NP_001333491.1 Accepted alive Link to Nucleotide Sequence:NM_001346562.3Link to Protein Sequence:NP_001333491.1Re-query CCDS DB by Nucleotide ID:NM_001346562Re-query CCDS DB by Protein ID:NP_001333491Link to BLAST:NP_001333491.1
Original member Current member NCBI NM_001346563.3 NP_001333492.1 Accepted alive Link to Nucleotide Sequence:NM_001346563.3Link to Protein Sequence:NP_001333492.1Re-query CCDS DB by Nucleotide ID:NM_001346563Re-query CCDS DB by Protein ID:NP_001333492Link to BLAST:NP_001333492.1
Original member Current member NCBI NM_001346564.3 NP_001333493.1 Accepted alive Link to Nucleotide Sequence:NM_001346564.3Link to Protein Sequence:NP_001333493.1Re-query CCDS DB by Nucleotide ID:NM_001346564Re-query CCDS DB by Protein ID:NP_001333493Link to BLAST:NP_001333493.1
Original member Current member NCBI NM_001346565.3 NP_001333494.1 Accepted alive Link to Nucleotide Sequence:NM_001346565.3Link to Protein Sequence:NP_001333494.1Re-query CCDS DB by Nucleotide ID:NM_001346565Re-query CCDS DB by Protein ID:NP_001333494Link to BLAST:NP_001333494.1
Original member Current member NCBI NM_022116.7 NP_071399.2 Accepted alive Link to Nucleotide Sequence:NM_022116.7Link to Protein Sequence:NP_071399.2Re-query CCDS DB by Nucleotide ID:NM_022116Re-query CCDS DB by Protein ID:NP_071399Link to BLAST:NP_071399.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036227.1 674 Q6PIW4-1 674 100% 0 0
NP_001274421.1 674 Q6PIW4-1 674 100% 0 0
NP_001274422.1 674 Q6PIW4-1 674 100% 0 0
NP_001274423.1 674 Q6PIW4-1 674 100% 0 0
NP_001274424.1 674 Q6PIW4-1 674 100% 0 0
NP_001333489.1 674 Q6PIW4-1 674 100% 0 0
NP_001333490.1 674 Q6PIW4-1 674 100% 0 0
NP_001333491.1 674 Q6PIW4-1 674 100% 0 0
NP_001333492.1 674 Q6PIW4-1 674 100% 0 0
NP_001333493.1 674 Q6PIW4-1 674 100% 0 0
NP_001333494.1 674 Q6PIW4-1 674 100% 0 0
NP_071399.2 674 Q6PIW4-1 674 100% 0 0

Chromosomal Locations for CCDS 5510.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 50445263 50447287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2025 nt):
ATGCAGACCTCCAGCTCTAGATCTGTGCACCTGAGTGAATGGCAGAAGAATTACTTCGCAATTACATCTG
GCATATGTACCGGACCGAAGGCAGATGCATACCGTGCACAGATATTACGCATTCAGTATGCATGGGCAAA
CTCTGAGATTTCCCAGGTCTGTGCTACCAAACTGTTCAAAAAATATGCAGAGAAATATTCTGCAATTATT
GATTCTGACAATGTTGAATCTGGGTTGAATAATTATGCAGAAAACATTTTAACTTTGGCAGGATCTCAAC
AAACAGATAGTGACAAGTGGCAGTCTGGATTGTCAATAAATAATGTTTTCAAAATGAGTAGTGTACAGAA
GATGATGCAAGCTGGCAAAAAATTCAAAGACTCTCTGTTGGAACCTGCTCTTGCATCAGTGGTAATCCAT
AAGGAGGCCACTGTCTTTGATCTTCCTAAATTTAGTGTTTGTGGTAGTTCTCAAGAGAGTGACTCATTAC
CTAACTCAGCTCATGATCGAGACCGGACCCAAGACTTCCCGGAGAGCAATCGTTTGAAACTCCTTCAGAA
TGCCCAGCCACCTATGGTGACTAACACTGCTAGGACTTGTCCTACATTCTCAGCACCTGTAGGTGAGTCA
GCTACTGCAAAATTCCATGTCACACCATTGTTTGGAAATGTCAAAAAGGAAAATCACAGCTCTGCAAAAG
AAAACATAGGACTTAATGTGTTCTTATCTAACCAGTCTTGTTTTCCTGCTGCCTGTGAAAATCCACAGAG
GAAGTCTTTTTATGGTTCTGGCACCATTGATGCACTTTCCAATCCAATACTGAATAAGGCTTGTAGTAAA
ACAGAAGATAATGGCCCAAAGGAGGATAGCAGCCTGCCTACATTTAAAACTGCAAAAGAACAATTATGGG
TAGATCAGCAAAAAAAGTACCACCAACCTCAGCGTGCATCAGGGTCTTCATATGGTGGTGTAAAAAAGTC
TCTAGGAGCTAGTAGATCCCGAGGGATACTTGGAAAGTTTGTTCCTCCTATACCCAAGCAAGATGGGGGA
GAGCAGAATGGAGGAATGCAATGTAAGCCTTATGGGGCAGGACCTACAGAACCAGCACATCCAGTTGATG
AGCGTCTGAAGAACTTGGAGCCAAAGATGATTGAACTTATTATGAATGAGATTATGGATCATGGACCTCC
AGTAAATTGGGAAGATATTGCAGGAGTAGAATTTGCTAAAGCCACCATAAAGGAAATAGTTGTGTGGCCC
ATGTTGAGGCCAGACATCTTTACTGGTTTAAGGGGACCCCCTAAAGGAATTTTGCTCTTTGGTCCTCCTG
GGACTGGTAAAACTCTAATTGGCAAGTGCATTGCTAGTCAGTCTGGGGCAACATTCTTTAGCATCTCTGC
TTCATCCTTAACTTCTAAATGGGTAGGTGAGGGGGAGAAAATGGTCCGTGCATTGTTTGCTGTTGCAAGG
TGTCAGCAACCAGCTGTGATATTTATTGACGAAATTGATTCCTTGTTATCTCAACGGGGAGATGGTGAGC
ATGAATCTTCTAGAAGGATAAAAACAGAATTTTTAGTTCAATTAGATGGAGCAACAACATCTTCTGAAGA
TCGTATCCTAGTGGTGGGAGCAACAAATCGGCCACAAGAAATTGATGAGGCTGCCCGGAGAAGATTGGTG
AAAAGGCTTTATATTCCCCTCCCAGAAGCTTCAGCCAGGAAACAGATAGTAATTAATCTAATGTCCAAAG
AGCAGTGTTGCCTCAGTGAAGAAGAAATTGAACAGATTGTACAGCAGTCTGATGCGTTTTCAGGAGCAGA
CATGACACAGCTTTGCAGGGAGGCTTCTCTTGGTCCTATTCGCAGTTTACAAACTGCTGACATTGCTACC
ATAACACCGGATCAAGTTCGACCCATAGCTTACATTGATTTTGAAAATGCTTTTAGAACTGTGCGACCTA
GTGTTTCTCCAAAAGATTTAGAGCTTTATGAAAACTGGAACAAAACTTTTGGTTGTGGAAAGTAA

Translation (674 aa):
MQTSSSRSVHLSEWQKNYFAITSGICTGPKADAYRAQILRIQYAWANSEISQVCATKLFKKYAEKYSAII
DSDNVESGLNNYAENILTLAGSQQTDSDKWQSGLSINNVFKMSSVQKMMQAGKKFKDSLLEPALASVVIH
KEATVFDLPKFSVCGSSQESDSLPNSAHDRDRTQDFPESNRLKLLQNAQPPMVTNTARTCPTFSAPVGES
ATAKFHVTPLFGNVKKENHSSAKENIGLNVFLSNQSCFPAACENPQRKSFYGSGTIDALSNPILNKACSK
TEDNGPKEDSSLPTFKTAKEQLWVDQQKKYHQPQRASGSSYGGVKKSLGASRSRGILGKFVPPIPKQDGG
EQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWP
MLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR
CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV
KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIAT
ITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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