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Report for CCDS55156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55156.1 Public Homo sapiens 7 CAV1 24 110 108 CCDS HistoryNCBI Gene:857Re-query CCDS DB by CCDS ID:55156.1Re-query CCDS DB by GeneID:857See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55156.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393467.1 ENSP00000377110.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393467.1Link to Ensembl Protein Viewer:ENSP00000377110.1Re-query CCDS DB by Nucleotide ID:ENST00000393467Re-query CCDS DB by Protein ID:ENSP00000377110
Original member Current member EBI ENST00000393468.1 ENSP00000377111.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393468.1Link to Ensembl Protein Viewer:ENSP00000377111.1Re-query CCDS DB by Nucleotide ID:ENST00000393468Re-query CCDS DB by Protein ID:ENSP00000377111
Original member Current member EBI ENST00000405348.6 ENSP00000384348.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405348.6Link to Ensembl Protein Viewer:ENSP00000384348.1Re-query CCDS DB by Nucleotide ID:ENST00000405348Re-query CCDS DB by Protein ID:ENSP00000384348
Original member Current member NCBI NM_001172895.1 NP_001166366.1 Accepted alive Link to Nucleotide Sequence:NM_001172895.1Link to Protein Sequence:NP_001166366.1Re-query CCDS DB by Nucleotide ID:NM_001172895Re-query CCDS DB by Protein ID:NP_001166366Link to BLAST:NP_001166366.1
Original member Current member NCBI NM_001172896.2 NP_001166367.1 Accepted alive Link to Nucleotide Sequence:NM_001172896.2Link to Protein Sequence:NP_001166367.1Re-query CCDS DB by Nucleotide ID:NM_001172896Re-query CCDS DB by Protein ID:NP_001166367Link to BLAST:NP_001166367.1
Original member Current member NCBI NM_001172897.2 NP_001166368.1 Accepted alive Link to Nucleotide Sequence:NM_001172897.2Link to Protein Sequence:NP_001166368.1Re-query CCDS DB by Nucleotide ID:NM_001172897Re-query CCDS DB by Protein ID:NP_001166368Link to BLAST:NP_001166368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166366.1 147 Q03135-2 147 100% 0 0
NP_001166367.1 147 Q03135-2 147 100% 0 0
NP_001166368.1 147 Q03135-2 147 100% 0 0

Chromosomal Locations for CCDS 55156.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 116526588 116526689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 116558946 116559287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGCAGACGAGCTGAGCGAGAAGCAAGTGTACGACGCGCACACCAAGGAGATCGACCTGGTCAACCGCG
ACCCTAAACACCTCAACGATGACGTGGTCAAGATTGACTTTGAAGATGTGATTGCAGAACCAGAAGGGAC
ACACAGTTTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGTGACGAAATACTGGTTTTACCGC
TTGCTGTCTGCCCTCTTTGGCATCCCGATGGCACTCATCTGGGGCATTTACTTCGCCATTCTCTCTTTCC
TGCACATCTGGGCAGTTGTACCATGCATTAAGAGCTTCCTGATTGAGATTCAGTGCATCAGCCGTGTCTA
TTCCATCTACGTCCACACCGTCTGTGACCCACTCTTTGAAGCTGTTGGGAAAATATTCAGCAATGTCCGC
ATCAACTTGCAGAAAGAAATATAA

Translation (147 aa):
MADELSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYR
LLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVR
INLQKEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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