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Report for CCDS47857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47857.1 Public Homo sapiens 8 TCEA1 24 110 108 CCDS HistoryNCBI Gene:6917Re-query CCDS DB by CCDS ID:47857.1Re-query CCDS DB by GeneID:6917See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47857.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396401.7 ENSP00000395483.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396401.7Link to Ensembl Protein Viewer:ENSP00000395483.2Re-query CCDS DB by Nucleotide ID:ENST00000396401Re-query CCDS DB by Protein ID:ENSP00000395483
Original member Current member NCBI NM_201437.3 NP_958845.1 Accepted alive Link to Nucleotide Sequence:NM_201437.3Link to Protein Sequence:NP_958845.1Re-query CCDS DB by Nucleotide ID:NM_201437Re-query CCDS DB by Protein ID:NP_958845Link to BLAST:NP_958845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958845.1 280 P23193-2 280 100% 0 0

Chromosomal Locations for CCDS 47857.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 53968104 53968112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53970392 53970463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53979025 53979171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53984363 53984517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53986969 53987025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53988114 53988259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53993668 53993755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53999945 54000050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54022063 54022125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGAGGACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACGCGTCCACAA
GAATCGGAATGTCAGTTAATGCTATTCGCAAGCAGAGTACAGATGAGGAAGTTACATCTTTGGCAAAGTC
TCTCATCAAATCCTGGAAAAAATTATTAGATGGGCCATCAACTGAGAAAGACCTTGACGAAAAGAAGAAA
GAACCTGCAATTACATCGCAGAACAGCCCTGAGGCAAGAGAAGAAAGTACTTCCAGCGGCAATGTAAGCA
ACAGAAAGGATGAGACAAATGCTCGAGATACTTATGTTTCATCCTTTCCTCGGGCACCAAGCACTTCTGA
TTCTGTGCGGTTGAAGTGTAGGGAGATGCTTGCTGCAGCTCTTCGAACAGGGGATGACTACATTGCAATT
GGAGCTGATGAGGAAGAATTAGGATCTCAAATTGAAGAAGCTATATATCAAGAAATAAGGAATACAGACA
TGAAATACAAAAATAGAGTACGAAGTAGGATATCAAATCTTAAAGATGCAAAAAATCCAAATTTAAGGAA
AAATGTCCTCTGTGGGAATATTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGAT
GAGCTGAAAGAGATGCGGAAAAACTTGACCAAAGAAGCCATCAGAGAGCATCAGATGGCCAAGACTGGTG
GGACCCAGACTGACTTGTTCACATGTGGCAAATGTAAAAAGAAGAATTGCACTTACACACAGGTACAAAC
CCGTAGTGCTGATGAACCAATGACAACATTTGTTGTCTGTAATGAATGTGGAAATCGATGGAAGTTCTGT
TGA

Translation (280 aa):
MEDEVVRFAKKMDKMVQKKNASTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKK
EPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAI
GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASD
ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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