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Report for CCDS34928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34928.1 Public Homo sapiens 8 RPL30 24 110 108 CCDS HistoryNCBI Gene:6156Re-query CCDS DB by CCDS ID:34928.1Re-query CCDS DB by GeneID:6156See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34928.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287038.8 ENSP00000287038.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287038.8Link to Ensembl Protein Viewer:ENSP00000287038.3Re-query CCDS DB by Nucleotide ID:ENST00000287038Re-query CCDS DB by Protein ID:ENSP00000287038
Original member Current member EBI ENST00000521291.5 ENSP00000428085.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521291.5Link to Ensembl Protein Viewer:ENSP00000428085.1Re-query CCDS DB by Nucleotide ID:ENST00000521291Re-query CCDS DB by Protein ID:ENSP00000428085
Original member Current member NCBI NM_000989.4 NP_000980.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000989.4Link to Protein Sequence:NP_000980.1Re-query CCDS DB by Nucleotide ID:NM_000989Re-query CCDS DB by Protein ID:NP_000980Link to BLAST:NP_000980.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000980.1 115 P62888 115 100% 0 0

Chromosomal Locations for CCDS 34928.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 98041801 98041850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98042645 98042775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98044943 98045088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98045347 98045367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGGTGGCCGCAAAGAAGACGAAAAAGTCGCTGGAGTCGATCAACTCTAGGCTCCAACTCGTTATGAAAA
GTGGGAAGTACGTCCTGGGGTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAATTGGTCAT
TCTCGCTAACAACTGCCCAGCTTTGAGGAAATCTGAAATAGAGTACTATGCTATGTTGGCTAAAACTGGT
GTCCATCACTACAGTGGCAATAATATTGAACTGGGCACAGCATGCGGAAAATACTACAGAGTGTGCACAC
TGGCTATCATTGATCCAGGTGACTCTGACATCATTAGAAGCATGCCAGAACAGACTGGTGAAAAGTAA

Translation (115 aa):
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTG
VHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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