NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47907.1 Public Homo sapiens 8 LRP12 24 110 108 CCDS HistoryNCBI Gene:29967Re-query CCDS DB by CCDS ID:47907.1Re-query CCDS DB by GeneID:29967See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47907.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424843.6 ENSP00000399148.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424843.6Link to Ensembl Protein Viewer:ENSP00000399148.2Re-query CCDS DB by Nucleotide ID:ENST00000424843Re-query CCDS DB by Protein ID:ENSP00000399148
Original member Current member NCBI NM_001135703.3 NP_001129175.1 Accepted alive Link to Nucleotide Sequence:NM_001135703.3Link to Protein Sequence:NP_001129175.1Re-query CCDS DB by Nucleotide ID:NM_001135703Re-query CCDS DB by Protein ID:NP_001129175Link to BLAST:NP_001129175.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129175.1 840 Q9Y561-2 840 100% 0 0

Chromosomal Locations for CCDS 47907.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104490673 104491539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104495077 104495209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104496972 104498076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104499317 104499519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104508939 104509074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104588819 104588897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGGCCTGTCGCTGGAGCACAAAAGAGTCTCCGCGGTGGAGGTCTGCGTTGCTCTTGCTTTTCCTCGCTG
GGGTGTACGCTTGTGGAGAGACTCCAGAGCAAATACGAGCACCAAGTGGCATAATCACAAGCCCAGGCTG
GCCTTCTGAATATCCTGCAAAAATCAACTGTAGCTGGTTCATAAGGGCAAACCCAGGCGAAATCATTACT
ATAAGTTTTCAGGATTTTGATATTCAAGGATCCAGAAGGTGCAATTTGGACTGGTTGACAATAGAAACAT
ACAAGAATATTGAAAGTTACAGAGCTTGTGGTTCCACAATTCCACCTCCGTATATCTCTTCACAAGACCA
CATCTGGATTAGGTTTCATTCGGATGACAACATCTCTAGAAAGGGTTTCAGACTGGCATATTTTTCAGGG
AAATCTGAGGAACCAAATTGTGCTTGTGATCAGTTTCGTTGTGGTAATGGAAAGTGTATACCAGAAGCCT
GGAAATGTAATAACATGGATGAATGTGGAGATAGTTCCGATGAAGAGATCTGTGCCAAAGAAGCAAATCC
TCCAACTGCTGCTGCTTTTCAACCCTGTGCTTACAACCAGTTCCAGTGTTTATCCCGTTTTACCAAAGTT
TACACTTGCCTCCCCGAATCTTTAAAATGTGATGGGAACATTGACTGCCTTGACCTAGGAGATGAGATAG
ACTGTGATGTGCCAACATGTGGGCAATGGCTAAAATATTTTTATGGTACTTTTAATTCTCCCAATTATCC
AGACTTTTATCCTCCTGGAAGCAATTGCACCTGGTTAATAGACACTGGTGATCACCGTAAAGTCATTTTA
CGCTTCACTGACTTTAAACTTGATGGTACTGGTTATGGTGATTATGTCAAAATATATGATGGATTAGAGG
AGAATCCACACAAGCTTTTGCGTGTGTTGACAGCTTTTGATTCTCATGCACCTCTTACAGTTGTTTCTTC
TTCTGGACAGATAAGGGTACATTTTTGTGCTGATAAAGTGAATGCTGCAAGGGGATTTAATGCTACTTAC
CAAGTAGATGGGTTCTGTTTGCCATGGGAAATACCCTGTGGAGGTAACTGGGGGTGTTATACTGAGCAGC
AGCGTTGTGATGGGTATTGGCATTGCCCAAATGGAAGGGATGAAACCAATTGTACCATGTGCCAGAAGGA
AGAATTTCCATGTTCCCGAAATGGTGTCTGTTATCCTCGTTCTGATCGCTGCAACTACCAGAATCATTGC
CCAAATGGCTCAGATGAAAAAAACTGCTTTTTTTGCCAACCAGGAAATTTCCATTGTAAAAACAATCGTT
GTGTGTTTGAAAGTTGGGTGTGTGATTCTCAAGATGACTGTGGTGATGGCAGCGATGAAGAAAATTGCCC
AGTAATCGTGCCTACAAGAGTCATCACTGCTGCCGTCATAGGGAGCCTCATCTGTGGCCTGTTACTCGTC
ATAGCATTGGGATGTACTTGTAAGCTTTATTCTCTGAGAATGTTTGAAAGAAGATCATTTGAAACACAGT
TGTCAAGAGTGGAAGCAGAATTGTTAAGAAGAGAAGCTCCTCCCTCGTATGGACAATTGATTGCTCAGGG
TTTAATTCCACCAGTTGAAGATTTTCCTGTTTGTTCACCTAATCAGGCTTCTGTTTTGGAAAATCTGAGG
CTAGCGGTACGATCTCAGCTTGGATTTACTTCAGTCAGGCTTCCTATGGCAGGCAGATCAAGCAACATTT
GGAACCGTATTTTTAATTTTGCAAGATCACGTCATTCTGGGTCATTGGCTTTGGTCTCAGCAGATGGAGA
TGAGGTTGTCCCTAGTCAGAGTACCAGTAGAGAACCTGAGAGAAATCATACTCACAGAAGTTTGTTTTCC
GTGGAGTCTGATGATACAGACACAGAAAATGAGAGAAGAGATATGGCAGGAGCATCTGGTGGGGTTGCAG
CTCCTTTGCCTCAAAAAGTCCCTCCCACAACGGCAGTAGAAGCGACAGTAGGAGCATGTGCAAGTTCCTC
AACTCAGAGTACCCGAGGTGGTCATGCAGATAATGGAAGGGATGTGACAAGTGTGGAACCCCCAAGTGTG
AGTCCAGCACGTCACCAGCTTACAAGTGCACTCAGTCGTATGACTCAGGGGCTACGCTGGGTACGTTTTA
CATTAGGACGATCAAGTTCCCTAAGTCAGAACCAGAGTCCTTTGAGACAACTTGATAATGGGGTAAGTGG
AAGAGAAGATGATGATGATGTTGAAATGCTAATTCCAATTTCTGATGGATCTTCAGACTTTGATGTGAAT
GACTGCTCCAGACCTCTTCTTGATCTTGCCTCAGATCAAGGACAAGGGCTTAGACAACCATATAATGCAA
CAAATCCTGGAGTAAGGCCAAGTAATCGAGATGGCCCCTGTGAGCGCTGTGGTATTGTCCACACTGCCCA
GATACCAGACACTTGCTTAGAAGTAACACTGAAAAACGAAACGAGTGATGATGAGGCTTTGTTACTTTGT
TAG

Translation (840 aa):
MACRWSTKESPRWRSALLLLFLAGVYACGETPEQIRAPSGIITSPGWPSEYPAKINCSWFIRANPGEIIT
ISFQDFDIQGSRRCNLDWLTIETYKNIESYRACGSTIPPPYISSQDHIWIRFHSDDNISRKGFRLAYFSG
KSEEPNCACDQFRCGNGKCIPEAWKCNNMDECGDSSDEEICAKEANPPTAAAFQPCAYNQFQCLSRFTKV
YTCLPESLKCDGNIDCLDLGDEIDCDVPTCGQWLKYFYGTFNSPNYPDFYPPGSNCTWLIDTGDHRKVIL
RFTDFKLDGTGYGDYVKIYDGLEENPHKLLRVLTAFDSHAPLTVVSSSGQIRVHFCADKVNAARGFNATY
QVDGFCLPWEIPCGGNWGCYTEQQRCDGYWHCPNGRDETNCTMCQKEEFPCSRNGVCYPRSDRCNYQNHC
PNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEENCPVIVPTRVITAAVIGSLICGLLLV
IALGCTCKLYSLRMFERRSFETQLSRVEAELLRREAPPSYGQLIAQGLIPPVEDFPVCSPNQASVLENLR
LAVRSQLGFTSVRLPMAGRSSNIWNRIFNFARSRHSGSLALVSADGDEVVPSQSTSREPERNHTHRSLFS
VESDDTDTENERRDMAGASGGVAAPLPQKVPPTTAVEATVGACASSSTQSTRGGHADNGRDVTSVEPPSV
SPARHQLTSALSRMTQGLRWVRFTLGRSSSLSQNQSPLRQLDNGVSGREDDDDVEMLIPISDGSSDFDVN
DCSRPLLDLASDQGQGLRQPYNATNPGVRPSNRDGPCERCGIVHTAQIPDTCLEVTLKNETSDDEALLLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH